Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 367 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  103 bits (258), Expect = 6e-27
 Identities = 101/362 (27%), Positives = 158/362 (43%), Gaps = 44/362 (12%)

Query: 24  LLIAGCSEPTKLE--RDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           L +A CSE + +   R   P V+ A           F  V  A  +S L FRV+G++ + 
Sbjct: 16  LFLAACSESSGVRDPRTQPPLVRAATVASADQASRSFTGVVVARVQSELGFRVSGKVLER 75

Query: 82  HVKEGARVKQGDILAEIEPTDYRL-------AVDNAQARFSVIDSQYRRSQPLVEKGLLA 134
            V  G  VK+G+ L  ++P D  L       AV  A AR         R++ LV  G ++
Sbjct: 76  LVDTGQTVKRGEPLMRLDPVDLGLQAQAQQQAVAAAVARARQTADDEARNRDLVVAGAIS 135

Query: 135 KSQFDEIAAQRQIARAELELAKLRLS-------FTQLRAPMDGIISRVSAEQFESVQVGQ 187
            S +D I +    A+AEL  A+ + S       +  L A  DG++     E  + V  GQ
Sbjct: 136 ASAYDRIKSLADTAKAELNAAQAQASVARNASGYAVLLADADGVVVDTLVEPGQVVSAGQ 195

Query: 188 QIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPA 247
            +V +      E ++ LP+ L   +P   + A  E  +   S +V PAR++  +   DP 
Sbjct: 196 PVVRLAKAGPREAIVHLPETL---RPAMGDRA--EARLYGDSARVIPARLRLLSDAADPL 250

Query: 248 TGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLN------PLNTISIPIEAIFNADGD 301
           T TF         E   +L+G  V  +  G  V L+         +++IPI A+ +    
Sbjct: 251 TRTF---------EARYVLEGSNVS-APLGSTVSLDIAAGKPARQSLAIPIAALHDPG-- 298

Query: 302 ELDKTAQYVWLL-NNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKV 360
                   VW++      V+ R V+L   S     VS G+ AG+++V  G   L DG +V
Sbjct: 299 ----RGPGVWVIAGTPAQVTWRAVQLLGVSDDSANVSGGLEAGEQVVALGTHLLHDGEQV 354

Query: 361 QV 362
           +V
Sbjct: 355 RV 356