Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  128 bits (322), Expect = 2e-34
 Identities = 107/362 (29%), Positives = 174/362 (48%), Gaps = 40/362 (11%)

Query: 24  LLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFHV 83
           +L++GC +         P V V    E   D   F     A  +S L FRVAG I++  V
Sbjct: 17  VLLSGCGKDEAPPEPVRPVVFVEVRPESNQDFGRFAGNIQARYQSVLGFRVAGRIARRDV 76

Query: 84  KEGARVKQGDILAEIEPTDYRLAV-------DNAQARFSVIDSQYRRSQPLVEKGLLAKS 136
             GA VK+GD+LA ++PTD +  V        N QA+     +  RR Q L ++G+ A++
Sbjct: 77  DVGAEVKKGDLLATLDPTDQQNTVRARQGDLANVQAQLINAQANARRQQELFDRGVGAQA 136

Query: 137 QFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQI 189
           Q D         ++ ++ A+A  + A+ +LS+++LR+  D +++    E  + V  GQ++
Sbjct: 137 QLDIALTDLKTASSSQEQAKAAAQQARDQLSYSELRSDHDAVVTEWKVEAGQVVTAGQEV 196

Query: 190 VNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYP-----ARIKEFTTEP 244
           V +   D  E +I LPD L    P+         VV   + Q+ P     A I+E   + 
Sbjct: 197 VTLAQPDIKEAVIDLPDTLADQLPS--------DVVFTVASQLNPEVNTTATIREIEPQA 248

Query: 245 DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELD 304
           D  T T    LSL        L G A+ V+       + P   + +PI A+   DG    
Sbjct: 249 DRTTRTRRARLSLAQTPAAFRL-GTAISVTLSST---ITP--RMRLPINALQEVDG---- 298

Query: 305 KTAQYVWLLNNDN-TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
              + VW++++ + TV+ R V +A        +++G+ AG+++V AGV  L+ G KV+V 
Sbjct: 299 --KRQVWIVDSQSQTVNPRAVTIASRDSDSFVLTDGVKAGEKVVSAGVNSLKPGQKVKVD 356

Query: 364 EE 365
           EE
Sbjct: 357 EE 358