Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., Secretion protein HlyD from Pseudomonas syringae pv. syringae B728a

 Score =  115 bits (288), Expect = 2e-30
 Identities = 105/366 (28%), Positives = 183/366 (50%), Gaps = 39/366 (10%)

Query: 21  AHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVA-----NAAERSHLSFRVA 75
           A L  +AGC E  K     LPRV V    + V    F  +VA      A  ++ LSFRV 
Sbjct: 15  AALAALAGCGEE-KPAAPELPRVYV----QTVKSADFAASVALTGDVQARVQTRLSFRVN 69

Query: 76  GEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNA-------QARFSVIDSQYRRSQPLV 128
           G+I + +V  G RV    +LA ++P D +  VD+A       QAR S   + + R Q L+
Sbjct: 70  GKIIQRNVDVGDRVTARQVLARLDPKDLQTNVDSAAAAVAAEQARVSQSRAAFVRQQKLL 129

Query: 129 EKGLLAKSQFDEIAA-------QRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFE 181
            KG  ++S++D   A         + A+A+L  A+ +L +T L A   G+I+   AE  +
Sbjct: 130 PKGYTSRSEYDSAQAAVRGSESSLKAAQAQLANAREQLGYTALVADAPGVITARQAEVGQ 189

Query: 182 SVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFT 241
            VQ    I ++      + +  + + L+  QP  ++  ++ T++  P+ +V   +++E T
Sbjct: 190 VVQATMPIFDLARDGDRDAVFNVYESLFV-QPPTNQAVQV-TLLDNPNIKV-SGKVREVT 246

Query: 242 TEPDPATGTFTVTLSL-PMPEQELILDGMAVEVSAKGQHVGLNPLN-TISIPIEAIFNAD 299
                 TGT  + ++L P+PE   +   ++V +SA        P N ++ +P  A+    
Sbjct: 247 PAVSAQTGTLQIKIALDPLPEGMDLGSVVSVALSA--------PANASVELPWAALTKDL 298

Query: 300 GDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMK 359
           G++L K A  VW+++    V+ R+V + +   S V + +G+ +G+++VVAG   L   M+
Sbjct: 299 GEQLGKPA--VWVVDEQGKVNLRKVTVTRYLTSKVIIGDGLKSGEKVVVAGGQLLHPDMQ 356

Query: 360 VQVLEE 365
           V + E+
Sbjct: 357 VDIAEQ 362