Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  135 bits (340), Expect = 2e-36
 Identities = 110/358 (30%), Positives = 182/358 (50%), Gaps = 39/358 (10%)

Query: 25  LIAGCSEPTKLERDTLPRVKV---AQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           +++GCS+     ++T+  VKV   A AGE    +L +     A    +L FRV G+I++ 
Sbjct: 24  VLSGCSQEKVETKETIRPVKVVEIAAAGEP--RELHYSGSVRARTEMNLGFRVGGKITER 81

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYR-------RSQPLVEKGLLA 134
            V  G RVK GDILA I+ TDYRLAV +A+A     + Q +       R++ L  K   +
Sbjct: 82  LVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAEQLFTKSFSS 141

Query: 135 KSQ-------FDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQ 187
           ++Q       +D+  + R  A + L  AK ++S+T L+A  +GI++ V+A+  + V  G 
Sbjct: 142 QAQLDQATLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVNADIGQVVGTGT 201

Query: 188 QIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQ--VYPARIKEFTTEPD 245
            +V +      EV I +P+       T  +  K    VR  S    V    ++E +   D
Sbjct: 202 PVVTVAVDGEKEVEIAVPE----IDVTEFKPGK-PVGVRFWSNDMLVLDGHVREVSGSAD 256

Query: 246 PATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDK 305
             + TF+V +SLP  E+ L+  GM   V A       +    +SIP+ A+   DG  +  
Sbjct: 257 QRSRTFSVRVSLPNDERVLL--GMTATVEA----AAASSAPLVSIPLSALSKKDGQNI-- 308

Query: 306 TAQYVWLLNND-NTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQV 362
               VW+++ D +TV  R ++LA  + + V+V +G+ AGD +V AG   + + +KV++
Sbjct: 309 ----VWIVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRL 362