Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., multidrug resistance protein AcrA/AcrE family (RefSeq) from Shewanella amazonensis SB2B

 Score =  100 bits (249), Expect = 6e-26
 Identities = 90/381 (23%), Positives = 183/381 (48%), Gaps = 45/381 (11%)

Query: 12  KIIRYTAWLAHLLLIAGCSEPTK--LERDTLP-----RVKVAQAGEKVSDKLFFPAVANA 64
           ++++  + +  +L ++ C E  +    +  +P      V+V  A + +  +L  P  + A
Sbjct: 3   QMLKIASAIGMVLWVSACQEDAQQAANQQQMPPMEVGTVQVTAAPQNIMVEL--PGRSRA 60

Query: 65  AERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNA-------QARFSVI 117
              + +  +V+G I + +  EG  VK+G  L +I+   Y+  +++A       QA  +  
Sbjct: 61  FLEAEVRPQVSGIIMERNFVEGREVKEGQSLYKIDDATYKATLESAKADLASAQASLASA 120

Query: 118 DSQYRRSQPLVEKGLLAKSQFDEI-------AAQRQIARAELELAKLRLSFTQLRAPMDG 170
            ++  R + LV+   ++K  FDE         A+ ++A A+L  A + L++T+++AP+ G
Sbjct: 121 KARAARYEKLVKTNAISKQDFDEADAAYKEALARVKVAEAQLHTANINLNYTEVQAPISG 180

Query: 171 II--SRVSAEQFESVQVGQQIVNIHNIDSVEV--------LIQLPDRLYATQPTASELAK 220
            I  S V+     +   GQ +  I  +D + V        L+ L  +L A +  A++ A+
Sbjct: 181 RIGKSSVTPGALVTANQGQVLATIQQLDPINVDITQSSAQLLALKAKLRAGKLQAADNAE 240

Query: 221 IETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHV 280
           ++ V+   +   +  +++      D  TG+  +    P P+  ++L GM V       + 
Sbjct: 241 VQLVLEDGTTYEHKGKLQFAEVSVDENTGSVILRAEFPNPDN-VLLPGMYVRAML---NT 296

Query: 281 GLNPLNTISIPIEAIF-NADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEG 339
           G++P N I +P +AI  N  G+ +        ++N ++ V  R V  A+      +++ G
Sbjct: 297 GVDP-NAILVPQKAITRNTRGEAV------AMVVNAESKVEARTVTTAEVINHQWRITSG 349

Query: 340 INAGDRLVVAGVARLRDGMKV 360
           +NAGD+L+V G+ ++R G  V
Sbjct: 350 LNAGDKLIVEGLQKIRPGAPV 370