Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., acriflavin resistance periplasmic protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  154 bits (389), Expect = 4e-42
 Identities = 88/314 (28%), Positives = 172/314 (54%), Gaps = 23/314 (7%)

Query: 58  FPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVI 117
           F  V  +AER+ L+F+ +G+++   V+EG +V +G  LA ++  + + A+++A   F   
Sbjct: 55  FTGVVRSAERAELAFKQSGKLASMTVQEGDKVSRGQTLATLDDAELKTALNSANVEFKQA 114

Query: 118 DSQYRRSQPLVEKG-LLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVS 176
            + + R   +      +++S  D++  +R +A  ++  A+  L+   L AP DG +++  
Sbjct: 115 QTDFDRGNKIFSTSQAISRSDLDQLKVKRDLAANKVAKAQQDLANASLNAPFDGTVAQKL 174

Query: 177 AEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPAR 236
              F +VQ  Q +  +HN  ++EV+I +P +L+  +P A + A  E  +   +GQ +   
Sbjct: 175 VNNFATVQPNQPVYVVHNPANLEVMINVPGKLFL-EPNAGQRAVAE--IEGLAGQRFGLT 231

Query: 237 IKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEV------SAKGQHVGLNPLNTISI 290
            + +  + DP + T+ V L    P    +L GM+ +V      +A+ QH        + +
Sbjct: 232 YRYYAADADPVSQTYQVVLGFDDPSAANLLPGMSAKVYPVMDSAAQNQH--------LLV 283

Query: 291 PIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAG 350
           P++A+  ++       +Q+VWL+N D++V+KR +R+     + +QV+EG++ GD++VVAG
Sbjct: 284 PVDAVVPSNTG-----SQFVWLVNADSSVAKRSIRVGNILGNQIQVTEGLSPGDKIVVAG 338

Query: 351 VARLRDGMKVQVLE 364
           V  L +GMKV  ++
Sbjct: 339 VHALAEGMKVHPMQ 352