Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  117 bits (292), Expect = 6e-31
 Identities = 82/304 (26%), Positives = 145/304 (47%), Gaps = 15/304 (4%)

Query: 60  AVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDS 119
           A   A   +H+  R+AG I   HV+EG RVKQG +LA I+    +  +D ++A   +I+ 
Sbjct: 56  ATLEAPVEAHVVTRIAGLIEALHVEEGDRVKQGQLLAVIDAKRQQYELDRSEAEVLIIEQ 115

Query: 120 QYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQ 179
           +  R + +  K  ++     ++    Q A+A L+LAKL++  +Q+ +P+DGII++   + 
Sbjct: 116 ELARVKKMKSKDYVSADSIAKLEYNLQAAKARLDLAKLQVKESQIVSPVDGIIAKRFVKA 175

Query: 180 FESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKE 239
               +  +++  + N D +  ++ LP++  ++          +        Q   A +  
Sbjct: 176 GNMAKEFEELFYVVNQDELHGIVHLPEQQLSSLRLGQH---ADIYASGQKNQAVNAEVLR 232

Query: 240 FTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNAD 299
            +   D  +GTF VTL +P  +  ++  GM   V  K         N I++P  AI N D
Sbjct: 233 ISPVVDAQSGTFKVTLKVP-NQNGILKSGMFTRVELKYD----THENVITVPYNAIINQD 287

Query: 300 GDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMK 359
               +K   YV     D T  +R+V L     + V+V  GI  G+ LV+ G   L+D   
Sbjct: 288 ----NKQTLYV---VQDTTAERREVELGYREGNMVEVVAGIAPGEHLVIRGQQNLKDQSL 340

Query: 360 VQVL 363
           V+++
Sbjct: 341 VEII 344