Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 358 a.a., periplasmic linker protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  181 bits (460), Expect = 2e-50
 Identities = 108/350 (30%), Positives = 190/350 (54%), Gaps = 6/350 (1%)

Query: 20  LAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKL-FFPAVANAAERSHLSFRVAGEI 78
           L  ++L+  C +   +E  T  RV V       +     F  VA A + + L+FRV G I
Sbjct: 9   LGLIVLLGSCRQAPDIEH-TPARVAVYTIPSTENQVTRVFSGVARAQDLTALAFRVEGRI 67

Query: 79  SKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQF 138
           ++  V +G RVK GD+LA +E  D+++A+++ +AR  V   Q  RS+ LV++ L+A++++
Sbjct: 68  ARIPVTKGQRVKAGDVLAVLEKNDFQIALNDRRARLDVTRKQAERSKTLVDQQLMAQAEY 127

Query: 139 DEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSV 198
           D++ A+  +ARAE   A+L L +T+L+AP DG+I  V  + FE+VQ G  ++++H  + +
Sbjct: 128 DQMNAEYLVARAEARQAELMLEYTKLKAPFDGLIGDVFLKSFENVQPGTLVLSVHRTERI 187

Query: 199 EVLIQLPDRLYATQ---PTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTL 255
           EV +Q+PD L A      T  +    +        + +   + E  TE DP + T+  T+
Sbjct: 188 EVDVQVPDLLIAVSRRAETGQQKQGFDVAFEAFPDKSFIGHLLEVNTEKDPQSHTYVATV 247

Query: 256 SLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLNN 315
           ++ +PE   +L+GM  +V+               +PI A+   DG ++D     VWL ++
Sbjct: 248 AVELPEGVKVLEGMPAKVTVDLGKATYTYRREYLLPISAVVMRDGSDIDLQDAGVWLYDS 307

Query: 316 -DNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
              TV  + VRL       ++V +G+  G ++V  G +RL DG +V++++
Sbjct: 308 ATGTVKFKPVRLGVIVGQSIEVVDGLADGQQVVTQGASRLVDGQQVELIQ 357