Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., multidrug resistance protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  163 bits (413), Expect = 6e-45
 Identities = 120/331 (36%), Positives = 189/331 (57%), Gaps = 19/331 (5%)

Query: 43  VKVAQAG--EKVSDKLFFPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEP 100
           VKV+Q    + ++ +L  PA   A+ER+ LSFRV+GEI    V+ G  VK G +LA+++P
Sbjct: 36  VKVSQIALADNMNQRLL-PAEVRASERAGLSFRVSGEIMDILVRPGEEVKAGQLLAKLDP 94

Query: 101 TDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLS 160
             Y   +  A+A++++    Y R+  LVE+G+++++ FD+  +   +A+A L+ A++ L+
Sbjct: 95  ALYEQQLAVAKAQYALAKVLYERNLSLVEQGVVSRNDFDKSKSNHDVAKAALDKAEVELA 154

Query: 161 FTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVLIQLPDR-LYATQPTASELA 219
           +T+L AP DG+IS+    QFE V+  + ++++ + + ++V  QLP++ +   Q   +   
Sbjct: 155 YTRLLAPYDGVISKRDKRQFEYVRAQEPVLSVRSENLIDVNFQLPEQYISPIQSYQANTG 214

Query: 220 KI-ETVVRVPS-GQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKG 277
           KI    VR  S    + A +KE +T  D +TG++TV L+LPMPEQ  IL GM+  V    
Sbjct: 215 KILVPEVRFDSRDSWFAASLKEMSTVADSSTGSYTVILTLPMPEQLNILPGMSATV---- 270

Query: 278 QHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVS 337
             V L P  T   P E    A   E DKT  + W L     + K +V L      HV VS
Sbjct: 271 -RVSL-PTETPIPPPEIPAGAVVQEGDKTWVFRW-LPESQLLQKVEVVL----EGHVLVS 323

Query: 338 EGINAGDRLVVAGVARLRDGMK-VQVLEERG 367
            G+N GD +VVAG   L+DG   V+ ++ERG
Sbjct: 324 -GLNDGDFVVVAGADELKDGQSAVRWVKERG 353