Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., efflux RND transporter periplasmic adaptor subunit from Rahnella sp. WP5

 Score =  106 bits (265), Expect = 9e-28
 Identities = 99/357 (27%), Positives = 168/357 (47%), Gaps = 29/357 (8%)

Query: 24  LLIAGCSEPTKLERDTLPRVKVAQAGEKVS-DKLFFPAVANAAERSHLSFRVAGEISKFH 82
           +++ GC +    +  ++  V+   A   V+   L       A E   L FR+ G I    
Sbjct: 36  IVLTGCGDKAHKQAPSVRPVRTISAPPPVALSSLIQTGEIRAHEEVTLGFRLDGRILTRQ 95

Query: 83  VKEGARVKQGDILAEIEPTDYRLAVDNAQARFS-------VIDSQYRRSQPLVEKGLLAK 135
            + G RV  G +LA  E    R    +AQA  +       V     RR Q L+  G +A+
Sbjct: 96  AEVGDRVIAGQVLATQESETSRNQFSSAQADLNSARAAEQVAALSLRRMQLLMPSGAIAR 155

Query: 136 SQFDEIAAQRQIARAE-------LELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQ 188
           SQ D   A  Q ARA+       L+ A+  +S+T+L AP DG+I++VSA   + V  GQ 
Sbjct: 156 SQLDSAQADWQAARAKRQSSEDALKNAQENVSWTKLTAPADGVITQVSASAGQVVSAGQS 215

Query: 189 IVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPAT 248
           ++ + +    + +  + D     Q  A  L  I +++  PS  V     ++ + + DP T
Sbjct: 216 VITLASGSLRDAVFDVADPQSVPQ-QADSLFTI-SLLSAPS-VVAQGHFRDVSPQADPQT 272

Query: 249 GTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQ 308
            T+ + ++L  P   + L G +V+++       L     I++P  A+  +     DK A 
Sbjct: 273 RTWRLRITLDNPPPAMAL-GASVQLTLNASGPRL-----IALPASALTRSG----DKPAV 322

Query: 309 YVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLEE 365
           +V +     T+  R V + + S S + +S G+  G+R+V+AGV++LR+G KV   E+
Sbjct: 323 FV-VDEKTLTLHLRPVDIGRYSTSEIFLSAGVQPGERVVIAGVSKLREGEKVMPGED 378