Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  108 bits (271), Expect = 2e-28
 Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 43/376 (11%)

Query: 11  MKIIRYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAE---R 67
           M   R+ A +A  LL+ GC++ ++ +    P +    A  + ++     AV    E   +
Sbjct: 1   MSAPRFVAVIAAALLLTGCNDKSETKPPVRPVMSTVIAPLQATNL----AVVGTVEPQFK 56

Query: 68  SHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQY------ 121
           +   FR+ G +    V  G  V++G  LA ++P    LAV +AQA  +   +Q       
Sbjct: 57  TDYGFRMLGRLIARPVNIGDVVEKGQTLAAVDPFAAELAVRSAQADLATAQAQLVNASGT 116

Query: 122 -RRSQPLVEKGLLAKSQFD-----EIAAQRQIARAELELAKLR--LSFTQLRAPMDGIIS 173
             R + L+E G   K+  D     + AAQ  + RA+  L K R  LS+T++ A   G+++
Sbjct: 117 ANRQRALIETGATTKATLDSAEQGDAAAQAAVVRAQSALTKAREQLSYTKIEAQYAGVVT 176

Query: 174 RVSAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELA---KIETVVRVPSG 230
            V A+  + V  GQ +  +   D  E +I + + L +     + L    +++  VRV   
Sbjct: 177 AVGAQVGQVVNPGQMVATVARPDIREAVIDVAEDLVSVLKIGAPLTVALQLDPRVRVDG- 235

Query: 231 QVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISI 290
                +++E   + D  T    V ++L  P +   L G  +     G+     P     +
Sbjct: 236 -----KVREIAPQADQVTRARRVRITLENPPETFRL-GTTITTLIPGK-----PSRGFRL 284

Query: 291 PIEAIFNADGDELDKTAQYVWLLNN-DNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVA 349
           P  AI    GD+       VW+++    +VSKR V++A +     QV++G+ AG R+V A
Sbjct: 285 PATAILR-QGDQAS-----VWVIDTAKGSVSKRNVQVAPSDNGTAQVTDGLEAGMRIVTA 338

Query: 350 GVARLRDGMKVQVLEE 365
           GV  L++G  V+   E
Sbjct: 339 GVHHLQEGQMVRFERE 354