Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas fluorescens SBW25-INTG

 Score =  122 bits (307), Expect = 1e-32
 Identities = 109/371 (29%), Positives = 170/371 (45%), Gaps = 40/371 (10%)

Query: 15  RYTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRV 74
           R T  LA  LL+  CS+         P + +    E   +   F     A   S+L FRV
Sbjct: 3   RLTLILAASLLLVACSKEEPPPEPVRPVLSMEVTSENQENLGRFAGTIQARYESNLGFRV 62

Query: 75  AGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQY-------RRSQPL 127
            G I++  V  GA V++G +LA ++PTD +  + +AQ   + + +QY       RR Q L
Sbjct: 63  PGRIARRAVDVGAEVEKGALLAVLDPTDQQNQLRSAQGDLARVQAQYINAQANARRQQEL 122

Query: 128 VEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQF 180
             +G+ A++Q D          A    A+A +  AK +L++ +LR    GI++  +AE  
Sbjct: 123 FNRGVGAQAQLDIAQTDLKTTQASLDQAQAAVNQAKDQLNYAELRTDHAGIVTAWNAEAG 182

Query: 181 ESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYP-----A 235
           + V  GQQ+V +   D  E +I LP  L    P          VV + +GQ+ P     A
Sbjct: 183 QVVSAGQQVVTLARPDIKEAVIDLPAGLAERLP--------PDVVFLVAGQLDPSVQTTA 234

Query: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295
            ++E   +   AT T    L+L        L G A+ V+       + P   I +P+ A+
Sbjct: 235 IVREIEPQAQSATRTRRARLTLAETPPAFRL-GTAISVTLS---TAIAP--RIELPLSAL 288

Query: 296 FNADGDELDKTAQYVWLLNNDN-TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARL 354
              DG    KT   +WLL+  N TV  R + +         +S G+  G+R+V AGV  L
Sbjct: 289 QEVDG----KTR--IWLLDTQNQTVQPRDITVISRDADSAVLSGGVKPGERIVTAGVNSL 342

Query: 355 RDGMKVQVLEE 365
           + G KV++ E+
Sbjct: 343 KPGQKVKIDED 353