Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., putative secretion protein from Phaeobacter inhibens DSM 17395

 Score =  109 bits (272), Expect = 1e-28
 Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 24/354 (6%)

Query: 14  IRYTAWLAHLLLIAGCSEPTKLERDTLPRVK--VAQAGEKVSDKLFFPAVANAAERSHLS 71
           +R  A +A L+L+        L  D L  VK  V Q+G     + F+  VA A E   L+
Sbjct: 5   LRAIAGIAALMLVG----VPALAADVLKPVKLMVTQSGAMPIHREFYGQVA-AKETVDLA 59

Query: 72  FRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKG 131
           F+V G++ KF V EGA V +G ++AE++   + L +  AQ +    D    R + L   G
Sbjct: 60  FQVGGQVVKFPVTEGAFVPKGALVAELDLEPFELKLGQAQLQKEQADRTVTRLEKLT--G 117

Query: 132 LLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVN 191
            +++   D+   Q  ++R  L  A   L    L AP D ++S      F +V  G  +V 
Sbjct: 118 TVSQVSIDDAETQAGLSRIALRDADYALEHATLNAPFDALVSSREVALFSTVSAGAPVVR 177

Query: 192 IHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTF 251
           +H++  + + + +P+ L+  Q      A   T     S   YP  I EF  E      T+
Sbjct: 178 LHDMSELHIEVDVPEVLF--QQGEDNDALTITATFPGSDTAYPLEILEFDAEASSVGQTY 235

Query: 252 TVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVW 311
            VT  L  P+   I  G +  V            + I +P  AI  A   E       V 
Sbjct: 236 RVTFRLDPPKDRQIFPGASTTVRVTVD----TGASAIVVPPTAIVPAANGETG-----VM 286

Query: 312 LLN----NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQ 361
           L +    ++ TV+  +V  A      ++++ G+  G+ +V+ G   L DG  V+
Sbjct: 287 LFSPKGGDEGTVTWTKVETAATDGGQIEITSGLQGGEEIVLTGGGALADGEAVR 340