Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 97.1 bits (240), Expect = 7e-25
 Identities = 86/365 (23%), Positives = 170/365 (46%), Gaps = 38/365 (10%)

Query: 24  LLIAGCSEPTKLERDTLPRVKVA---QAGEKVSDKLFFPAVANAAERSHLSFRVAGEISK 80
           +L+A CS+  +++ +   + KV       + +     F     A ++  +  +++G +  
Sbjct: 14  ILLAACSQQAEVDGEFTEQPKVTVQVMQPQLIQLTEQFMGKTQAVDQVEILPKISGYLIS 73

Query: 81  FHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQ-------YRRSQPLVEKGLL 133
               +GA VK+GD+L EI+P  ++  V   +A  +   +Q       + ++Q L+ +  L
Sbjct: 74  QVYTDGAHVKKGDLLFEIDPKPFQAEVARLEANLAQKTAQMMLQAKKHEKAQALLTQDAL 133

Query: 134 AKSQFDEIAAQR-------QIARAELELAKLRLSFTQLRAPMDGIIS--RVSAEQFESVQ 184
           +  + ++I A+        Q A+AEL  A+L L  T + AP +GI+S  RVS        
Sbjct: 134 SSLEVEQIEAELLGMKAEVQSAKAELNYAQLDLENTHIYAPFNGIMSDSRVSVGALVGPD 193

Query: 185 VGQQIVNIHNIDSVEVLIQLPDRLYATQ-----PTASELAKIETVVRVPSGQVY--PARI 237
             + +  + + D++ V I+L ++ Y            E+A  E  + + +G +Y     +
Sbjct: 194 A-EPLTTLVSSDAMHVDIKLDEKQYLNDLQKRVQAGEEIASPEMALTLANGTLYNHKGEV 252

Query: 238 KEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFN 297
                  D  +G+    ++ P PE  L++ G  V VS++ Q         + +P   +  
Sbjct: 253 DFIDNHVDSRSGSIRFRVTFPNPEG-LLVPGQFVSVSSREQVAQ----QQLVVPQAVV-- 305

Query: 298 ADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDG 357
               + D+  +YV  +N DN V  R V+L     +   V +G+ AG+R++++G+  +R G
Sbjct: 306 ----QEDQGGRYVLTVNQDNVVEARYVKLGLRQANTWIVQDGLQAGERVILSGLQSVRAG 361

Query: 358 MKVQV 362
           ++V V
Sbjct: 362 VEVDV 366