Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  105 bits (263), Expect = 1e-27
 Identities = 85/350 (24%), Positives = 161/350 (46%), Gaps = 20/350 (5%)

Query: 20  LAHLLLIAGC-SEPTKLERD--TLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAG 76
           L  + +++ C +E TK E +   +P          VS      A   A + + +  R+AG
Sbjct: 13  LLFVAVLSACGNEETKKEEEKYAVPVETTTVIQGDVSSFYSTTATLEAPQEADVVSRIAG 72

Query: 77  EISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKS 136
            I    V+EG RV +G +LA I+    R  +  +QA   +I+ +  R + +  K  ++  
Sbjct: 73  LIESIKVEEGDRVSKGQLLAVIDAKRQRYDLARSQAEVEIIEQELNRLKKMSNKEFISAD 132

Query: 137 QFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNID 196
              ++    Q A A+ +LA L++  + +R+P+DG++++   +     +  +Q+  + N D
Sbjct: 133 SMAKLEYNLQAAIAKRDLAALQVQESMVRSPIDGVVAKRYVKAGNMAKEFEQLFYVVNQD 192

Query: 197 SVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLS 256
            +  ++ LP+    +     E    E      +     A++   +   DP +GTF VTLS
Sbjct: 193 ELYGIVHLPEAQLQSLRLGQE---AELYANKHTKDTIHAKVLRISPIVDPQSGTFKVTLS 249

Query: 257 LPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQY-VWLLNN 315
           +P    +L   GM   V  +         N I++P  A+ N D        QY ++++  
Sbjct: 250 VPNQNAQL-KAGMFTRVELRYD----THSNVITVPYNAVVNQDN-------QYALYVVQG 297

Query: 316 DNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLEE 365
           DN + +R+V L       V+V  G+  G+++V+ G   L+D   V+V+ +
Sbjct: 298 DNAL-RREVALGYREADTVEVVSGLEPGEQIVIRGQQNLKDQSLVEVISQ 346