Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (257), Expect = 8e-27
 Identities = 71/306 (23%), Positives = 147/306 (48%), Gaps = 24/306 (7%)

Query: 64  AAERS-HLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYR 122
           AA RS  ++  V+G++   ++ +   V QG +L  +E    +  +  A+A  +    +  
Sbjct: 87  AANRSVQIAAEVSGKVQAINLSDNQAVSQGQVLVHLEDAKAKANLAEAKAYLNDERRKLG 146

Query: 123 RSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFES 182
             + L+++  + +++ D   A   IA A L+ A+  L +  L+AP DG+I  V     + 
Sbjct: 147 EYKRLIKQHAITQTEIDAQLASVDIAEARLQAAQADLDYHTLKAPFDGVIGLVDFSLGKL 206

Query: 183 VQVGQQIVNIHNIDSVEVLIQLPDR----LYATQPTASELAKIETVVRVPSGQVYPARIK 238
           V VG ++V++ ++ S+ + +Q+P+R    +Y   P  +  +          G+ +  ++ 
Sbjct: 207 VSVGSELVSLDDLSSMRLDLQIPERYLSQIYLGMPVVASSS-------AWPGEQFHGQVV 259

Query: 239 EFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNA 298
                 +  T    V ++   P  +L   GM +        +   P+    +P++A+   
Sbjct: 260 AMAPRINSETLNLKVRVNFDNPSLQL-RPGMLISA-----RLDFAPVTQAVVPVQAL--- 310

Query: 299 DGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGM 358
              E   T ++V+++++DN   + QV L       V + +G++ GDR+VV G+  +RDG+
Sbjct: 311 ---EYSGTKRFVYVIDSDNIARRTQVTLGARIDDQVLIDDGLSLGDRIVVKGLVNMRDGI 367

Query: 359 KVQVLE 364
           KV+ +E
Sbjct: 368 KVEDVE 373