Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 97.4 bits (241), Expect = 6e-25
 Identities = 89/370 (24%), Positives = 175/370 (47%), Gaps = 40/370 (10%)

Query: 24  LLIAGCSEPTKLERDTLPRVKVAQAGEK-VSDKLFFPAVANAAERSHLSFRVAGEISKFH 82
           LL+A C +        +P V V  A  K +  K        A+E   +  ++ G++ K  
Sbjct: 19  LLLAACGKAPAPGPAVMPSVIVNTAQVKEIRAKTEIVGRTRASEDVVIKSQIQGQLLKRT 78

Query: 83  VKEGARVKQGDILAEIEPTDYRLAVDNAQARFS-------VIDSQYRRSQPLVEKGLLAK 135
             EG  +  G++L EI+P+ +   +   QA          V    + R + L+  G+++ 
Sbjct: 79  FVEGDDIDAGELLFEIDPSTFEAELAQQQAVLKQAIASRDVAVMNWERGRRLLPDGMISA 138

Query: 136 SQFDEIAAQRQI-------ARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQ 188
              DE+ +++         A A ++ A+L+LS+T++ AP+ G IS     Q + +    +
Sbjct: 139 QDMDELTSRKLTTAAGVVQAEAAVKAAELQLSYTKVYAPISGRISGAKVSQGDIITPQSE 198

Query: 189 IVNIHNIDSVEVLIQLPDR-LYATQPTASELAKIETVV-------RVPSGQVYPAR--IK 238
           + ++  +  + V  Q+ ++ + + +   S+ AK E  +       R+P+G ++     I 
Sbjct: 199 LASLVQLQPMWVNFQVAEKTIISAKQNFSKAAKHEVKISDIVIRLRLPNGTMFDETGYID 258

Query: 239 EFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLN--TISIPIEAIF 296
             +   D ATGT  +  +    E +L+L G+ V +  +      +P++   I IP  A+ 
Sbjct: 259 FISNRVDAATGTLELRATFNN-ESKLMLPGLFVTLVIE------SPISEQAILIPQAAV- 310

Query: 297 NADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRD 356
                + D+  ++V +L+ DN V KR V L        +V  G+N G+R+VV G+ ++R 
Sbjct: 311 -----QEDQQGRFVMVLDGDNKVQKRVVELGDRFGVDWRVLSGLNEGERIVVDGLQKIRP 365

Query: 357 GMKVQVLEER 366
           G++V+ +E++
Sbjct: 366 GIEVKAVEQQ 375