Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score =  159 bits (403), Expect = 9e-44
 Identities = 105/352 (29%), Positives = 193/352 (54%), Gaps = 15/352 (4%)

Query: 24  LLIAGCS-EPTKLERDTLPRVKVAQAGEKVSDKL-FFPAVANAAERSHLSFRVAGEISKF 81
           L++AGCS E  ++  +++  VK+ +  E  S  L  FPA   A +++ LSFR++G++ +F
Sbjct: 15  LVLAGCSTESAEIAPESVRPVKLLEITELGSGTLRSFPAKVAATKQAELSFRLSGQLIEF 74

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEI 141
            + +G RV +G++LA ++  D R  + N +A   +  + + R   L+ + L++++++D  
Sbjct: 75  SLVDGQRVTKGEVLARLDDRDARNQLLNREADHELAQADFNRKGELLRQALISQAEYDLA 134

Query: 142 AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVL 201
            AQ + + A L  A+ +LS+T ++AP  G +++   E F+ VQ  Q ++ +     ++V+
Sbjct: 135 KAQLKSSAANLASAQDQLSYTVIKAPFSGTVAKTKIENFQIVQANQPVLVLQKDRFIDVV 194

Query: 202 IQLPD----RLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSL 257
           IQ+P+    R+ +  P +  L  + T    P  Q Y AR+KEF T+  P T ++ V  +L
Sbjct: 195 IQVPESLASRVTSFNPHSPSLPMV-TFSNHPE-QQYAARLKEFATQVTPGTQSYEVVFTL 252

Query: 258 PMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLN-ND 316
           P P +  +L GM+ ++            + I +P  A+   D D        VW  +   
Sbjct: 253 PTPTEFSVLPGMSAQLILDIAGPDAKKKSAI-VPPSAVLKRDQD----GEPIVWTYDLGT 307

Query: 317 NTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE-ERG 367
             VS R+V L K +   +++++G+  GDR+VVAGVA+L +  +V+ L  +RG
Sbjct: 308 GQVSARKVSLGKVTSQGIEITQGLTVGDRVVVAGVAQLHESQQVKPLRWQRG 359