Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  116 bits (290), Expect = 1e-30
 Identities = 105/371 (28%), Positives = 169/371 (45%), Gaps = 35/371 (9%)

Query: 11  MKIIRYTAWLAHL-LLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSH 69
           MK I   A LA   +++A C +      +  P +         SD L+   V  A   + 
Sbjct: 1   MKTIPSFALLAATAMVLASCGKEAPKAPEPRPALTQVVGAAGQSDMLWVGEV-RARYETD 59

Query: 70  LSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRL--AVDNAQAR-----FSVIDSQYR 122
             FR+ G++ +  V  GA VK+G ILA ++P D  L  A  NAQ +     F V  ++Y 
Sbjct: 60  QGFRIGGKVVERKVDIGAVVKKGQILARLDPVDAGLSAAAANAQTKAAEADFLVAKAEYE 119

Query: 123 RSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLS-------FTQLRAPMDGIISRV 175
           R + L+EK  +++S FD   AQ + A A L+ A+ + +       +T L A  DG+++ V
Sbjct: 120 RQKKLLEKQFISQSAFDSREAQFKAALARLDQARAQAAVTGNQAGYTDLVAEKDGVVTDV 179

Query: 176 SAEQFESVQVGQQIVNIHNIDSVEVLIQLPD-RLYATQPTASELAKIETVVRVPSGQVYP 234
             E  + V  GQ  + +      EV++ +P+ R+   +P  S + ++         Q Y 
Sbjct: 180 KVEPGQVVSAGQPAIRLALAGDKEVVVAVPEGRMKGIEPGTSAVIRL----WANQDQSYA 235

Query: 235 ARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEA 294
           AR++E     D AT +F V +++  P+  L L GM   V        L       +P  A
Sbjct: 236 ARVREVAPAADAATRSFQVKVTVLEPDAGLRL-GMTAGVLIGSAEAPL------LVPTAA 288

Query: 295 IFNADGDELDKTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVAR 353
           +   DG         VW++N     V  R V         V V +G+  G+R+V+AGV +
Sbjct: 289 LTRQDGKNT------VWVVNPQSGEVQPRSVTTGPFREDGVVVEKGLARGERVVIAGVHK 342

Query: 354 LRDGMKVQVLE 364
           L+ G  V+ +E
Sbjct: 343 LQPGQLVRAVE 353