Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 94.4 bits (233), Expect = 5e-24
 Identities = 89/375 (23%), Positives = 153/375 (40%), Gaps = 39/375 (10%)

Query: 20  LAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFR--VAGE 77
           LA   ++ GC + +   +     + V Q  +     L +  V   A    +  R  V G 
Sbjct: 17  LALSAVLTGCKDESAAPKAMPAPLVVVQQVQPRDLPLTYEYVGQTAGSREVEVRARVGGI 76

Query: 78  ISKFHVKEGARVKQGDILAEIEPTDYRLAVDNA-------QARFSVIDSQYRRSQPLVEK 130
           + +    EG  VK+GD++ +I+P  ++  +D A       +AR     S   R  PL  +
Sbjct: 77  LLRRAYAEGRPVKKGDLMFDIDPEPFKADLDQALGQQAQAEARLQSAQSNRDRVLPLYRE 136

Query: 131 GLLAK-------SQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESV 183
             +++       ++FD   A  + ARA ++ A++ L +T++ AP+ G+ S+ +  +   V
Sbjct: 137 NAVSQKDRDDAVAEFDSAKAALEEARARVKTARINLGYTRVEAPISGMTSKETRSEGSLV 196

Query: 184 QV---GQQIVNIHNIDSVEVLIQLPD-------RLYATQPTASELAKIETVVRVPSGQVY 233
                G  +  I  +D V V    P        R+             E  VR+  G  Y
Sbjct: 197 TTTAEGSLLTTISKVDPVYVNFSAPSVDLFRLRRMREEGRITLPKKSYEVTVRLIDGSTY 256

Query: 234 PARIKEFTTEP--DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIP 291
                    +P  DP TGT  V    P PE E +L G  V V   G        N ++IP
Sbjct: 257 KRTGTVNFIDPLVDPLTGTIRVRAEFPNPEAE-VLPGQFVRVLMTGAVYN----NALAIP 311

Query: 292 IEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGV 351
             A+       +      VW++   +    R V ++    +   V +G+  G+R+VV G+
Sbjct: 312 QRAVLQTQQGPM------VWVIGEGDVAQPRPVEISLPIDNQYIVEKGLAPGERIVVEGL 365

Query: 352 ARLRDGMKVQVLEER 366
            ++R G  V + + R
Sbjct: 366 LKVRPGQPVTIGQPR 380