Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., efflux transporter, RND family, MFP subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  102 bits (253), Expect = 3e-26
 Identities = 100/371 (26%), Positives = 162/371 (43%), Gaps = 41/371 (11%)

Query: 23  LLLIAGCS---EPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSF--RVAGE 77
           L ++AGCS   +  K +    P        EK    +    V N    + +S   RV G+
Sbjct: 55  LAMLAGCSGGDDAAKAKPQKRPVPVATALAEKRDLPVVVRTVGNVEPYATVSVKSRVDGQ 114

Query: 78  ISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARF-------SVIDSQYRRSQPLVEK 130
           +   H KEG  V++GD+L  ++      A+  AQAR        +  D   RR + LV  
Sbjct: 115 VVGVHFKEGQDVRKGDLLFSVDRRALEAALSEAQARLQRDRVLLAKADEDVRRFEKLVAD 174

Query: 131 GLLAKSQF-------DEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESV 183
           G +++ Q+       D + A  +   A +E A+++LS+T + APM G   +V  +Q   V
Sbjct: 175 GYVSRDQYEQYRSSADSLRATVRADEASVETARVQLSYTTITAPMSGRAGQVKVDQGNMV 234

Query: 184 QVGQQ--IVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVP-----SGQVYPAR 236
           + G    +V I  I+ + V   LP+   AT         +    RVP     +G V    
Sbjct: 235 RAGADTVLVVIDQIEPIYVGFALPEMHLATARARMAAGGVPVQARVPGSANGAGGVSARG 294

Query: 237 IKEFTTEP-DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295
              F     + ATGT  +  +    E  ++  G  V+V  +   +G  P   + +P +A+
Sbjct: 295 TVSFVDNTVNTATGTIRMRGTFAN-EARVLWPGQFVDVYVE---LGEVP-GAVVVPAQAV 349

Query: 296 FNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLR 355
                 +      + +++  DNTV  R+VR   A    V + EG+ AG+R+V+ G  RL 
Sbjct: 350 ------QTGSQGLFAYVVVQDNTVQLRKVRTGLAHDGQVVIEEGVAAGERVVIDGHLRLT 403

Query: 356 DGMKVQVLEER 366
            G    V+EER
Sbjct: 404 PG---AVVEER 411