Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., efflux transporter, RND family, MFP subunit from Marinobacter adhaerens HP15

 Score =  103 bits (256), Expect = 1e-26
 Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 16/295 (5%)

Query: 74  VAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLL 133
           V G I   + + G  VKQGD+L  I+      A+   +A   + + +++R   L+ K  +
Sbjct: 77  VPGVIEAINFESGDVVKQGDVLIRIDAAIDEAALRTRRAEAQLAEQEFKRVSDLLPKRAV 136

Query: 134 AKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIH 193
           ++SQ+DE  A    ARA +  A+ +LS   +RAP DG +     +Q E +  G  IV I+
Sbjct: 137 SQSQYDEAKANFDAARARVNEAEAQLSKKIIRAPFDGTLGIRMVDQGEYIATGTPIVEIN 196

Query: 194 NIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTV 253
            +D + V   L ++      T   +  + TV  VP  Q +   +    T  +P T T  V
Sbjct: 197 MLDPIYVDYTLSEKNLPNVATGYPV--VATVAAVPE-QDFEGSVSAINTSVNPETRTVRV 253

Query: 254 TLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI-FNADGDELDKTAQYVWL 312
             +L  P+  L+  GM   V  +           +++P  AI +N  GD +     +V  
Sbjct: 254 RATLSNPD-NLLRPGMFATVLTQQPEDN----EVVTVPRTAISYNTYGDFV-----FVVE 303

Query: 313 LNNDN--TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLEE 365
            N+D    V++R V   +   + V V  G+ AG+ +V  G+ RLR G KV + +E
Sbjct: 304 ENDDGNLVVNRRTVTTGETRNTRVAVLSGLEAGETVVEKGLLRLRAGQKVAIQDE 358