Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., efflux transporter, RND family, MFP subunit from Marinobacter adhaerens HP15

 Score =  101 bits (252), Expect = 3e-26
 Identities = 95/363 (26%), Positives = 167/363 (46%), Gaps = 46/363 (12%)

Query: 24  LLIAGCSE----PTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEIS 79
           L ++GC      P   ++    RV     GE     L F  +  A +R+ L+F+V+G + 
Sbjct: 23  LFLSGCKASDVAPEPGQQKVSVRVSEVSGGESQDMPLRFSGIVRATQRATLTFQVSGTLK 82

Query: 80  KFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYR-------RSQPLVEKGL 132
           +  V+ G +V+ GD+LA +       A D+A+AR   + +QY+       RS  L E+G+
Sbjct: 83  EQAVELGQKVQAGDLLARVYNPGLEPARDSARARLEELRTQYQQAQREWERSSRLHERGV 142

Query: 133 LAKSQFDEIAAQRQ-------IARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQV 185
           +++   +++AA+R         ARA L  A   L  + LRAP  G +  +  E+ E V  
Sbjct: 143 VSEQTLEQLAARRDSLEASVATARASLAEATQLLEESTLRAPFSGRVEALLVERDEFVAA 202

Query: 186 GQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPD 245
           GQ ++ + + +  EV +++P  L        +  ++E  + V S       +++ +  P 
Sbjct: 203 GQPVMRLSSPEGREVEVRVPAYLL-------DHVELEQTLPVWS-------VQDRSRPPQ 248

Query: 246 PATGTFTVTLSLPMPEQELILDGMAVEVSAKGQ--HVGLNPL--NTISIP-IEAIFNADG 300
             +       S    E   +L  + V     GQ   VG+ P+  + I++P +  I NA+G
Sbjct: 249 SGSVVEIAQASAIRGELHPVLVSLPVNTLEPGQPVEVGITPVRESAITVPLLSVIRNAEG 308

Query: 301 DELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEG-INAGDRLVVAGVARLRDGMK 359
             + +          DN  S+  V + +     V V+ G ++ GD +V AG+ RL DG  
Sbjct: 309 VSVFRV--------RDNVASRVAVEVDRVVGERVVVTSGDLSPGDLVVYAGMTRLADGDA 360

Query: 360 VQV 362
           V+V
Sbjct: 361 VEV 363