Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug transporter subunit MdtA from Klebsiella michiganensis M5al

 Score =  102 bits (253), Expect = 2e-26
 Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 40/341 (11%)

Query: 48  AGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAV 107
           A E V   L       AA    +  RV G++   H  EG +VK GD+LAEI+P+ +++A+
Sbjct: 65  ASEAVPRYLSGLGTVTAANTVTVRSRVDGQLLAIHFTEGQQVKAGDLLAEIDPSQFKVAL 124

Query: 108 DNAQ-------ARFSVIDSQYRRSQPLVEKGLLAKSQFD-------EIAAQRQIARAELE 153
             A+       A  +       R Q LV+  L+++ + D       E     +   A + 
Sbjct: 125 AQAEGQLAKDRATLANARRDLARYQQLVKTNLVSRQELDTQQSLVSETQGTIKADEAAVA 184

Query: 154 LAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQ--IVNIHNIDSVEVLIQLPDRLYAT 211
            A+L+L+++++ AP+DG +     +    +  G    IV +     ++V+  LP+   AT
Sbjct: 185 SAQLQLNWSRITAPIDGRVGLKQVDIGNQISSGDTTGIVVLTQTHPIDVVFTLPENQIAT 244

Query: 212 QPTASELAK---IETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDG 268
              A +  K   +E   R    ++    +     + D  TGT  +       +  L    
Sbjct: 245 VVQAQKAGKKLVVEAWDRTNKQKISEGSLLSLDNQIDATTGTIKLKARFTNLDDALF--- 301

Query: 269 MAVEVSAKGQHVGLNPL-----NTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQ 323
                    Q V    L     N + IP  A+      ++     +VW+LN++N VSK  
Sbjct: 302 -------PNQFVNARMLVDTEQNAVVIPTAAL------QMGNEGHFVWVLNDENKVSKHT 348

Query: 324 VRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLE 364
           V         V ++ G++AGDR+V  G+ RL +G KV+V+E
Sbjct: 349 VTPGIQDSLKVVINAGLSAGDRVVTDGIDRLTEGAKVEVVE 389