Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Multidrug resistance protein MdtA from Enterobacter sp. TBS_079

 Score =  105 bits (263), Expect = 2e-27
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 43/380 (11%)

Query: 17  TAWLAHLL---LIAGCSEPTK---------LERDTLPRVKVAQAGEKVSDK-LFFPAVAN 63
           TAW  H       AG S P++         +    L  V+ A A  K   + L       
Sbjct: 22  TAWFWHNHSSDTSAGASSPSQRPASGGRHGMRGGALAPVQAATAVNKAVPRYLSGLGTIT 81

Query: 64  AAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDS---- 119
           AA    +  RV G++   H +EG +VK GD+LAEI+P+ +++ +  AQ + +   +    
Sbjct: 82  AANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPSQFKVTLAQAQGQLAKDKATLAN 141

Query: 120 ---QYRRSQPLVEKGLLAKSQFD-------EIAAQRQIARAELELAKLRLSFTQLRAPMD 169
                 R Q LV+  L+++ + D       E     +   A +  A+L+L ++++ AP+D
Sbjct: 142 ARRDLARYQQLVKTNLVSRQELDTQQSLVSEALGTLKADEAAVASAQLQLDWSRITAPID 201

Query: 170 GIISRVSAEQFESVQVGQQ--IVNIHNIDSVEVLIQLPDRLYATQPTASELAK---IETV 224
           G +     +    +  G    IV I     V+++  LP+   AT   A +  K   +E  
Sbjct: 202 GRVGLKQVDIGNQISSGDTTGIVVITQTHPVDLVFTLPESDIATVVQAQKAGKGLVVEAW 261

Query: 225 VRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNP 284
            R    ++    +     + D  TGT  + L      Q+   D +        + +    
Sbjct: 262 DRTNKQKLSEGTLLSLDNQIDTTTGT--IKLKARFNNQD---DALFPNQFVNARMLVATQ 316

Query: 285 LNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGD 344
            N + IP  A+      ++     +VW+LN++N VSK  V+        V +S G++AGD
Sbjct: 317 ENAVVIPTAAL------QMGNEGNFVWVLNSENNVSKHLVKTGIQDSQTVVISAGLSAGD 370

Query: 345 RLVVAGVARLRDGMKVQVLE 364
           R+V  G+ RL +G KV+V+E
Sbjct: 371 RVVTDGIDRLTEGAKVEVVE 390