Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., Multidrug resistance protein MdtA from Enterobacter sp. TBS_079

 Score =  105 bits (261), Expect = 3e-27
 Identities = 99/368 (26%), Positives = 156/368 (42%), Gaps = 42/368 (11%)

Query: 20  LAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEIS 79
           L   L+  G +  +   R   P V+ A           F  V  A  +S L FRV G+I 
Sbjct: 14  LPFALVACGDNHASDDPRTQPPLVRSASVIPANETSRAFTGVVVARTQSDLGFRVQGKIL 73

Query: 80  KFHVKEGARVKQGDILAEIEPTDYRL-------AVDNAQARFSVIDSQYRRSQPLVEKGL 132
           +  V  G  VKQG  L  ++P D +L       AVD AQAR     S   R + LV  G 
Sbjct: 74  ERLVDTGQTVKQGQPLMRLDPVDLKLQAQAQQRAVDAAQARARKASSDEARYRGLVASGA 133

Query: 133 LAKSQFDEIAAQRQIARAELELAKLRLSFTQ-------LRAPMDGIISRVSAEQFESVQV 185
           ++ S++D+I A    ARAEL  A+ +    Q       L A  DG++    AE  + V  
Sbjct: 134 VSASEYDQIKAAADSARAELSAARAQAGVAQNATGYAVLLADSDGVVMETLAEPGQVVSA 193

Query: 186 GQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPD 245
           GQ ++ +      E L+QLP+ L   +P     A     +     Q   A+++  +   D
Sbjct: 194 GQAVIRLARAGQREALVQLPETL---RPAVGSTAL--ATLYGNEKQPVSAKLRLLSDSAD 248

Query: 246 PATGTFTVTLSLPMPEQELILDG------MAVEVSAKGQHVGLNPLNTISIPIEAIFNAD 299
             T TF         E   +LDG      +   V+   +H G      + +P+ ++++A 
Sbjct: 249 ATTRTF---------EARYVLDGALANAPLGATVTLSIEH-GKGDSRVMQVPLASLYDAG 298

Query: 300 GDELDKTAQYVWLLNNDNT-VSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGM 358
                     VW ++   T V  + VR+        +V+ G+  G+++V  GV  L +G 
Sbjct: 299 ------KGPGVWRISAQPTKVVWQPVRVLSVGDDIARVTGGVQPGEKIVALGVHFLHEGE 352

Query: 359 KVQVLEER 366
            V++ E+R
Sbjct: 353 AVRLAEQR 360