Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 353 a.a., Multidrug resistance protein MdtA from Enterobacter sp. TBS_079

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 78/332 (23%), Positives = 145/332 (43%), Gaps = 46/332 (13%)

Query: 59  PAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVID 118
           P    A     +  R  G I++ H ++G  VK+GD+L E++  + R AV  AQA     +
Sbjct: 40  PGRIEAIHTVEIRARTEGVITQVHFRDGQYVKKGDVLFELDDAEPRAAVRLAQAEVKSAE 99

Query: 119 SQYRRSQ-------PLVEKGLLAKSQFDEIAAQRQIARAELELAKLR-------LSFTQL 164
           +  R++Q        L     +++   D    QR +A A LE AK R       L++T++
Sbjct: 100 ATLRQAQQQLSRFESLGNSNAISRHDVDNARMQRDVASAALEQAKARLETRNVTLAYTRI 159

Query: 165 RAPMDGIISRVSAEQFESVQV----GQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAK 220
            +P+DG   RV   QF +  +       +V++  +D + +   L +  +AT+  A + A 
Sbjct: 160 TSPIDG---RVGHSQFHAGSLVNPSSGVLVDVVQLDPIRIAFALEEGAFATK--AGQHAD 214

Query: 221 IETVVRV------PSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVS 274
           I  + R        +GQ     +       DP T +  +      P  +L+  G      
Sbjct: 215 ISALKRAWQARIDSNGQRLSGELTSVDNRIDPRTASVMLRAEFANPRHQLLPGG------ 268

Query: 275 AKGQHVGLNPLN---TISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASR 331
               +V L P +    +++P  A+      + +    + W++N +    KR +++A    
Sbjct: 269 --NVNVYLRPASAQPVLTVPAAAV------QQNGEGFFAWVVNAEGKAEKRPLKIAGQIG 320

Query: 332 SHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
              ++S G++ G+R +  G  R++ G  VQ+L
Sbjct: 321 QQFEISSGLHPGERAITDGAQRVQPGAAVQIL 352