Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 97/360 (26%), Positives = 152/360 (42%), Gaps = 36/360 (10%)

Query: 26  IAGCSEPTKLERDTLPRVKV-AQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKFHVK 84
           I GC           P+V V A     V++ + F     A E   ++ RV G +     +
Sbjct: 24  IYGCDSRNAYVPPPPPKVTVGAPHVGPVTEYMEFSGTIAAVESVDITARVTGTLRSAQFR 83

Query: 85  EGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQP--------LVEKG----- 131
           +G+ V +GD L  IEP  Y+ A+  A+A   V  +   R++         L EK      
Sbjct: 84  DGSTVHKGDPLFIIEPEPYQAALQRAEAELEVQQAALARAETELARSRKLLTEKAGSETD 143

Query: 132 -LLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQ--Q 188
            +  + Q D   A    A+A++E A++ L +T++ AP DG ISR  A+    V  G   +
Sbjct: 144 VVKWQQQRDSAKANISRAKAQIETARIDLGYTRITAPFDGQISRRFADPGNVVGPGAVTR 203

Query: 189 IVNIHNIDSVEVLIQLPDR----LYATQP----TASELAKIETVVRVPSGQVYPARIKEF 240
           +  I   D V V   + +R    L A +P     ++    +E  +    G  +  ++   
Sbjct: 204 LATIVRRDQVHVYFNINERDLLRLMAERPKPKTASAPTMPLELALADEDGFPHAGKLDYA 263

Query: 241 TTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADG 300
               DPATGT  +    P P   L+    A    A GQ         + +P  AI     
Sbjct: 264 DPGVDPATGTMQLRGLFPNPSGRLLPGLFARIRVAVGQSD-----KAMMVPDRAIGQ--- 315

Query: 301 DELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKV 360
              D++  YV ++N  N   +R V L      +  VS+G++A DR+VV G+ R R G  V
Sbjct: 316 ---DQSGSYVIIVNAQNIAEQRAVVLGPLHEGYRVVSKGLSAEDRVVVNGIQRARPGSPV 372