Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 362 a.a., periplasmic multidrug efflux lipoprotein precursor from Caulobacter crescentus NA1000

 Score =  106 bits (265), Expect = 9e-28
 Identities = 99/368 (26%), Positives = 161/368 (43%), Gaps = 32/368 (8%)

Query: 12  KIIRYTAWLAHLLLIAGCSEPTKLE--RDTLPRVKVAQAGEKVSDKLFFPAVANAAERSH 69
           + + +   L  L  +A CS     +  R   P V+VA AG     +  F  V  A  +S 
Sbjct: 4   RTLAFALLLGGLTPLAACSGKDGADDPRTAAPIVRVATAGPASDGERRFSGVVTARVQSD 63

Query: 70  LSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVD-------NAQARFSVIDSQYR 122
           L FRVAG++    V  G  V++G  L  I+ TDY LAV         A+AR     S  +
Sbjct: 64  LGFRVAGKVVARLVDAGQTVRRGQPLMRIDATDYALAVSAQTELVAAARARAVQTASDEK 123

Query: 123 RSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLR-------LSFTQLRAPMDGIISRV 175
           R + LV  G ++   +D+  A  + A+A+L+ A+++         +  L A  DG++   
Sbjct: 124 RLRGLVAAGAISAIAYDQAKAAAEAAKAQLDAAEVQALVSRNTAGYAVLVADADGVVVET 183

Query: 176 SAEQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPA 235
            AE  + V  GQ +V + +    E  I LP+ +     ++++    E        +V  A
Sbjct: 184 LAEPGQVVAAGQPVVRLAHAGPREATITLPETVRPALGSSAQAFGFE------GDKVGQA 237

Query: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAI 295
           R+++ +   DP T TF     L  P  +  L G  V V    Q         +  PI A+
Sbjct: 238 RLRQLSDAADPRTRTFEAKYVLSGPVAQAPL-GSTVVVVLPAQPGAATV--GVEAPIGAL 294

Query: 296 FNADGDELDKTAQYVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARL 354
           ++            VW++    +TV  R V++A  S   V V++G+  G++ V  G   L
Sbjct: 295 YDTG------KGAGVWIVKPGASTVEWRPVQVAAVSAETVIVTQGLRGGEQFVALGAHLL 348

Query: 355 RDGMKVQV 362
             G +V+V
Sbjct: 349 HQGQRVRV 356