Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., RND efflux system, membrane fusion component BipC (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  104 bits (260), Expect = 4e-27
 Identities = 90/329 (27%), Positives = 151/329 (45%), Gaps = 37/329 (11%)

Query: 58  FPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVI 117
           +PA     +   +  +V+G I+K  V EGA V++G +L  I+PT Y  AV  A+A  +  
Sbjct: 47  YPATIKGRQDVEIRPQVSGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATA 106

Query: 118 DSQYRRSQPLVEKGL--------------LAKSQFDEIAAQRQIARAELELAKLRLSFTQ 163
           ++     Q  V+  +              +AK+   +  AQ   A+A+L  A+   SFTQ
Sbjct: 107 EAAVNTQQMTVDNKIELNKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQ 166

Query: 164 LRAPMDGIISRVSAE--QFESVQVGQQIVNIHNIDSVEVLIQLPDR-LYATQPTA----S 216
           +++P DG+I+ +        S  +   +  +  ID V V     ++ L A   T      
Sbjct: 167 VKSPSDGVINDIPYRLGALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTKTGGTIKE 226

Query: 217 ELAKIETV-VRVPSGQVYPA--RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEV 273
           E++KI  + +++  G  Y A  ++   T   D +TG+ ++    P  E  L   G A  +
Sbjct: 227 EISKIPAIKLQLIDGTTYDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANVL 286

Query: 274 SAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASR-S 332
                 +  N  N ISIP  A         DK  ++V++L  DNTV   ++ +       
Sbjct: 287 ------IPYNMENVISIPQSATVEIQ----DK--KFVYVLQPDNTVKYTEIGIFNLDNGK 334

Query: 333 HVQVSEGINAGDRLVVAGVARLRDGMKVQ 361
              V+ G+N GD++V+ GV  L+DG K+Q
Sbjct: 335 EYLVTSGLNPGDKIVIEGVQSLKDGQKIQ 363