Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., transmembrane protein precursor, possibly involved in transport (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  110 bits (276), Expect = 5e-29
 Identities = 96/349 (27%), Positives = 168/349 (48%), Gaps = 25/349 (7%)

Query: 23  LLLIAGCSEPTKLERDTLPRVK---VAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEIS 79
           ++L+A CS+ T++  D+ P VK   V  AG + +  L FP    AA+   LSFRV+G I 
Sbjct: 13  VVLLASCSQRTQIT-DSKPTVKIDTVLSAGGQTA--LQFPGRVKAAQDISLSFRVSGTIL 69

Query: 80  KFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFD 139
           + +V +G  V++G +LAE++P DY++ +D A+A +  + ++  R   L ++ +      D
Sbjct: 70  RMYVNDGTYVRKGQLLAELDPADYQIQLDAAEAEYQSVKAEAERVMALYKENVTTPDAND 129

Query: 140 EIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVE 199
           +     +   A+   AK +L +T+L AP  G + +   +  E++  G  +V+I +  + E
Sbjct: 130 KAMYGLKQITAKYNHAKDQLEYTRLYAPFSGYVQKRLFDSHETIAAGMPVVSIISEGTPE 189

Query: 200 VLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPM 259
           V I LP   Y  +    +         +  GQ Y   +   T + + A   +T+ L L  
Sbjct: 190 VEINLPAVEYIRR---QQFTGYTCTFDIYPGQEYALDLINVTPKAN-ANQLYTMRLQLKK 245

Query: 260 PE-QELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLNNDNT 318
            E Q L   GM   V+ +        +  +S+P  A+        DK    V+L +  + 
Sbjct: 246 GEAQALPSPGMNTMVTIECTE---GEVRHLSVPTGAVLR------DKGMASVFLYDASSR 296

Query: 319 VSKR----QVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
             +R      RL  + R  V  +EG+  GD +V +GV  ++DG +V+ L
Sbjct: 297 TIRRCDVTVTRLLGSGRCLV-TAEGLKPGDLIVASGVHHVKDGEQVEPL 344