Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., component of multidrug efflux system (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  126 bits (316), Expect = 1e-33
 Identities = 103/350 (29%), Positives = 169/350 (48%), Gaps = 21/350 (6%)

Query: 23  LLLIAGCSEPTKLERDTLPRVKVAQAGEKV-SDKLFFPAVANAAERSHLSFRVAGEISKF 81
           L L+  C +  K   + + RVKVA+A   V S +  F  +A   + + LSFRV G I  F
Sbjct: 13  LCLLTSCGKGEKKTNEPV-RVKVAEAEMLVPSAEREFSFIAKPFKETELSFRVGGPIDHF 71

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEI 141
            V  G    +GDI+AEI+  D+R+  + A+A +    +++ R + L EK  L+ S +++ 
Sbjct: 72  EVYAGNYYHRGDIIAEIDSRDFRIRKERAEAIYHQAKAEFERIKVLYEKNNLSASAYEKA 131

Query: 142 AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVL 201
            A    A+   E A   L  T+L AP DG I  V  E+++ V+  Q +V+  +I      
Sbjct: 132 RADYTSAKTAYETAVNELEDTKLIAPFDGYIGEVYIEKYQDVKATQSVVSFIDI------ 185

Query: 202 IQLPDRLYATQPTASELAKIETV---VRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLP 258
            QL    Y TQ  A +  +I+ V     V    VYPA++ E +        +F +T  LP
Sbjct: 186 TQLKIEAYVTQEIAFQAKEIKEVGIRFDVRPEAVYPAKVVEVSKSTTRNNLSFLMTALLP 245

Query: 259 MPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLN-NDN 317
             + E         +S K   + L+   T S+P+  +     +       YVW+++    
Sbjct: 246 NKQGE-----WPAGISGK---MLLDLPATSSVPMVTVPQTALNHRPTEGDYVWMVDQTTG 297

Query: 318 TVSKRQVRLAK-ASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLEER 366
            V KR+V L +      V+V +G+ AGD++ V+ +  L DGM V ++ ++
Sbjct: 298 QVVKRKVILGELLPNGKVEVKDGLQAGDKVAVSKLRFLSDGMPVDIISQK 347