Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., acriflavine resistance protein A precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 87.0 bits (214), Expect = 8e-22
 Identities = 79/322 (24%), Positives = 138/322 (42%), Gaps = 48/322 (14%)

Query: 73  RVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQ-------YRRSQ 125
           RV G +      EG  V +  +L  I    YR   D A+A+    ++Q        +R +
Sbjct: 78  RVEGYLENMLFAEGTYVNKNQVLFVINQDQYRAKADKARAQLKKDEAQALKAERDLKRIR 137

Query: 126 PLVEKGLL-------AKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAE 178
           PL E+          A++ ++   A   ++ A+L  A+L L +T +R+P+ G IS  + +
Sbjct: 138 PLYEQNAASQLDLDNAEAAYESAVATVAMSEADLAQAELELGYTIVRSPLAGHISERNVD 197

Query: 179 QFESVQVGQQIVNIHNIDSVEVLIQLP-----------DRLYATQPTASELAKIETVVRV 227
               V  G + +    + S  VL+                +   Q  ++   +    + +
Sbjct: 198 LGTLVGPGGKSLLATVVKSDTVLVDFSMTALDYLKSKERNINLGQQDSTRSWQPNITITL 257

Query: 228 PSGQVYPARIKEFTTEP--DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPL 285
               VYP +      EP  DP TGTF+V   +P P+Q L+           GQ   +  L
Sbjct: 258 ADNTVYPYKGYVDFAEPQVDPQTGTFSVRAEMPNPKQVLL----------PGQFTKVKLL 307

Query: 286 -----NTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGI 340
                  I +P++A+       ++K   Y++ +  D+TV KR + L     ++V V  G+
Sbjct: 308 LDVREGAILVPMKAV------TIEKGGAYIYTMRKDDTVEKRFIELGPEVGNNVVVERGL 361

Query: 341 NAGDRLVVAGVARLRDGMKVQV 362
             G+ +VV G  +L  GMKV++
Sbjct: 362 AVGETIVVEGFHKLTPGMKVRI 383