Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., RND transporter from Burkholderia phytofirmans PsJN

 Score = 94.4 bits (233), Expect = 4e-24
 Identities = 76/302 (25%), Positives = 133/302 (44%), Gaps = 31/302 (10%)

Query: 73  RVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGL 132
           RV G + +    +GA VKQG +L  IEP  YR  +   QA     + +  R + L     
Sbjct: 29  RVQGVLKEIGFSDGANVKQGQLLFRIEPDTYRAQLTYDQAELVNAEQELTRQKQLTADNA 88

Query: 133 LAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFE-----SVQVGQ 187
            ++S   +    R  A A+ +++++ L +T++RAP  G   R+ A  F+           
Sbjct: 89  TSESSLQKAQTTRDQALAKRDMSRINLGYTEIRAPFSG---RIGARSFDVGNLVGASDST 145

Query: 188 QIVNIHNIDSVEVLIQLPDR------LYATQPTASELAKIETVVRVPSGQVYPARIKEFT 241
           ++  +  I  V V   L +R      L+   P    +     V+  P+G+   A ++   
Sbjct: 146 KLATLDRIQPVYVNFTLNERDANRIGLFTKPPRTVRV----NVLGAPAGKGEDAALEFVD 201

Query: 242 TEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLN-PLNTISIPIEAIFNADG 300
           T  D ++G   +   +   +  LI  GM+VEV     H+    P N + +P  A+     
Sbjct: 202 TRVDSSSGAIRLRADIANKDAHLI-PGMSVEV-----HIPAGAPQNVLLVPDTALLR--- 252

Query: 301 DELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKV 360
              ++   +V ++N+ + + KR V       S   ++ G+NAGD++V  G   +  G KV
Sbjct: 253 ---EQAGAFVLVVNSASVIEKRAVVTGGLFGSLRAITSGLNAGDQVVTGGALAVAPGTKV 309

Query: 361 QV 362
           QV
Sbjct: 310 QV 311