Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 84/327 (25%), Positives = 158/327 (48%), Gaps = 36/327 (11%)

Query: 59  PAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAV-----DNAQAR 113
           P  + A   + +  +V+G ++K    EG  VKQG+ L +I+   Y+ A+     D A+A 
Sbjct: 56  PGRSKAFLEAEVRPQVSGIVTKRSFVEGGHVKQGESLYQIDSAPYKAALVSANADLARAN 115

Query: 114 FSVIDSQYR--RSQPLVEKGLLAKSQFDEIAAQRQ-------IARAELELAKLRLSFTQL 164
            S+  ++ +  R Q LV+   ++K  FDE  A  +       +A A +  AK+ L +T++
Sbjct: 116 ASLASAKAKAARYQQLVKTNAISKQDFDEAEAAYKEALASVTVAEAAINTAKINLEYTEV 175

Query: 165 RAPMDGIISR--------VSAEQFESVQVGQQI--VNIHNIDSVEVLIQLPDRLYATQPT 214
            AP+ G I +        V+A Q +++   QQ+  +N+    S   L++L  +L   +  
Sbjct: 176 LAPISGRIGKSSVTAGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLQQGKLQ 235

Query: 215 ASELAKIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVS 274
           A++ A ++ V+   +   +  +++      D  TG+  +    P P+  L+L GM V   
Sbjct: 236 AADNADVQLVLEDGTVYGHSGKLQFAEVSVDENTGSVILRAEFPNPDG-LLLPGMYVRAV 294

Query: 275 AKGQHVGLNPLNTISIPIEAIF-NADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSH 333
               + G +P   I +P +AI  NA G  +        ++N+   V  + V  A+   + 
Sbjct: 295 L---NTGTDP-QAILVPQKAISRNAKGQAV------AMVVNDQGVVEAKIVTTAEVIDNQ 344

Query: 334 VQVSEGINAGDRLVVAGVARLRDGMKV 360
            +++ G+ AGD+L+V G+ ++R G  V
Sbjct: 345 WRITAGLEAGDKLIVEGLQKIRPGAPV 371