Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  136 bits (343), Expect = 8e-37
 Identities = 97/357 (27%), Positives = 181/357 (50%), Gaps = 27/357 (7%)

Query: 23  LLLIAGCSEPTKLERDTLPR-VKVAQAGEKVSDKLF-FPAVANAAERSHLSFRVAGEISK 80
           +LL+ GC +     ++T+ R VK+ Q  +  S   + +P   ++ + + L+F V G++ K
Sbjct: 18  VLLLVGCEQSQIDTKETVSRPVKLLQVEQTPSTSTYRYPGSVSSVKEAVLAFEVPGKVIK 77

Query: 81  FHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDE 140
            HVKEG  VKQ  +LAEI+  DY+  +D+A++   V  S ++R +  ++   +    F +
Sbjct: 78  LHVKEGDFVKQDTVLAEIDDRDYQAQLDSAKSDLIVAKSDFQRYEKALKADAVTPQAFQQ 137

Query: 141 IAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEV 200
                ++A+A    A   L+ T+L AP  G +     + F +V   Q I+ +H+  + E+
Sbjct: 138 AKRNLEVAQAAFNQADKALTETKLIAPFAGRVVTREIDLFATVHAKQPIMQLHSESAYEM 197

Query: 201 LIQLPDRLYATQPTASELAKIE-------TVVRVPSGQVYPARIKEFTTEPDPATGTFTV 253
           ++ +P+  +A     +  A I+       T+   P  + +  +I EF+ + D AT T+ V
Sbjct: 198 VVSVPESDWAQGERVNSAADIKLDNQLFVTLTAFPDKR-FEGKITEFSGQADAATRTYKV 256

Query: 254 TLSLPMPEQELILDGM---AVEVSAKGQHVGLNPLNTISIPIEAIF-NADGDELDKTAQY 309
            ++  +P++  I  GM   A+ +S+          N +SIP++AI  N+D       + +
Sbjct: 257 KVAFSVPDKTPISSGMTGHAIYLSSN------ESTNILSIPLDAIVGNSD------NSAF 304

Query: 310 VWLLNNDN-TVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVLEE 365
           VWL +  N  V+K+ + +   +   V V  G+  GD + V+GV  L DG  V  +++
Sbjct: 305 VWLYDPINGQVTKKSITIGNITEQTVNVLSGLKVGDVIAVSGVHSLYDGYPVYPMKD 361