Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  152 bits (384), Expect = 1e-41
 Identities = 98/317 (30%), Positives = 174/317 (54%), Gaps = 15/317 (4%)

Query: 58  FPAVANAAERSHLSFRVAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVI 117
           FPA  +A  R+ LSFR++GE++   + EG +++QG +LA+++  D    +   +A   ++
Sbjct: 51  FPARVSANSRAELSFRISGELTDLALVEGQQIRQGSLLAKLDDRDAYNNLMTREAEHELL 110

Query: 118 DSQYRRSQPLVEKGLLAKSQFDEIAAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSA 177
            + ++R   L+++ L+++++FD   AQ + A+A L  A+ +LS+T+L AP  G +++   
Sbjct: 111 AADFQRKTELLKRKLISQAEFDSAQAQLKSAKAALAAARDQLSYTKLIAPFSGTVAKRLV 170

Query: 178 EQFESVQVGQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVP--SGQVYPA 235
           +  + VQ  Q I+ + N   ++V IQ+P+ + A+     +       VR    +G  + A
Sbjct: 171 DNHQIVQANQGILTLQNNSLLDVSIQVPEAMAASLNNYIQQQNFTAKVRFSALAGMEFDA 230

Query: 236 RIKEFTTEPDPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTIS--IPIE 293
           + KE++T+  P T  + V  SLP P+   +L GM+ E++     +   P  T S  +P+ 
Sbjct: 231 KFKEYSTQVTPGTQAYEVVFSLPQPKDIQLLPGMSAELTLA---LVKTPDQTASAIVPVT 287

Query: 294 AIFNADGDELDKTAQ-YVWLLN-NDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGV 351
           AI     D+ D+  Q  VW+       V    V L + +   ++V  GIN GD +V AGV
Sbjct: 288 AI-----DKRDQDGQVQVWVYQAQSGEVKPTAVTLGRVTTEGIEVLGGINKGDLIVSAGV 342

Query: 352 ARLRDGMKVQVLE-ERG 367
           ++L DGMKV+ L  +RG
Sbjct: 343 SQLSDGMKVKPLRWQRG 359