Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 103/384 (26%), Positives = 175/384 (45%), Gaps = 47/384 (12%)

Query: 16  YTAWLAHLLLIAGCSEPTKLERDTLPRVKVAQAGEKVSDKLF--FPAVANAAERSHLSFR 73
           Y + +   L ++GC +P   E    P++ V +     +  L+  +  V  A+    +  R
Sbjct: 21  YLSGVLLCLSVSGCQDP---EIKISPKMLVVEKVTTATVPLYGNYIGVTQASLDVEVRAR 77

Query: 74  VAGEISKFHVKEGARVKQGDILAEIEPTDYRLAVDNAQARFS----VIDSQYR---RSQP 126
           V G + +    EG+ VK G++L +I+   Y   V+  +A+ S    ++D   R   R +P
Sbjct: 78  VDGFVEEKRFVEGSAVKAGELLYQIDNKPYVAVVNRLKAKLSSQQAILDKAERDVKRLKP 137

Query: 127 LVEKGLLAKSQFDE----IAAQRQ---IARAELELAKLRLSFTQLRAPMDGIISRVSAEQ 179
           L E+   ++  +D     +A  R     +RAE+E A+L LS+T+++AP+ G++SR   + 
Sbjct: 138 LYEQDAASQLDYDNALSTLAQARSNLTASRAEVEEAELELSYTEIKAPIAGLVSRSEVDI 197

Query: 180 FESV-QVGQQIVN-IHNIDSVEVLIQLP--DRLYATQPTASELAKIETVVR--------- 226
              V   GQ ++  +  +D + V   +   D L A +   S  AK E  V          
Sbjct: 198 GALVGSKGQSLLTRVKQVDPIYVSFNMSALDYLNAQRRLTSYSAKKEAEVEGKALAGFVR 257

Query: 227 --VPSGQVYPARIKEFTTEP--DPATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGL 282
             +P    Y        T+P  +P TGTF V   LP PE+EL L G    V  K   +  
Sbjct: 258 ITLPDSSEYRYLGDVSFTDPQVNPNTGTFEVRAILPNPEKEL-LPGQYTNVRIKLSEIP- 315

Query: 283 NPLNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINA 342
              N I IP +A       ++D+   YV ++  +NTV +R + +       V V  G+ A
Sbjct: 316 ---NAIVIPQKAT------QVDQGGVYVMVVLPNNTVERRFIVIDHQGIEGVVVKSGLKA 366

Query: 343 GDRLVVAGVARLRDGMKVQVLEER 366
           G+ ++  G+ R+R G   + L  +
Sbjct: 367 GEMVITEGMHRVRHGQIAEPLSAK 390