Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., putative efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score =  111 bits (278), Expect = 3e-29
 Identities = 91/358 (25%), Positives = 170/358 (47%), Gaps = 31/358 (8%)

Query: 23  LLLIAGC--SEPTKLERDTLPRVKVAQAGEKVSDKLF-FPAVANAAERSHLSFRVAGEIS 79
           +L++AGC  SE   L     P V+V +    V+DK + F  V  +  R+ LSFRV G ++
Sbjct: 20  VLVLAGCGSSEDQTLTTSKRPLVQVMELPAPVTDKGYKFSGVLESENRADLSFRVQGVLA 79

Query: 80  KFHVKEGARVKQGDILAEIEPTDYRLAV-------DNAQARFSVIDSQYRRSQPLVEKGL 132
           +   +EG  V +G ++A ++P D++++V       D A+    +   + +R +  +    
Sbjct: 80  ELLAEEGVEVTKGQVIARLDPHDFQVSVLELTAKLDEAKTAHQLAKIELQRVKSAINDRA 139

Query: 133 LAKSQFDEIAAQRQIARAELEL-------AKLRLSFTQLRAPMDGIISRVSAEQFESVQV 185
           +A  + D   A    A+A +EL       A+  L +T+L +P DG++ +   +Q E V V
Sbjct: 140 IASVKLDRAVAAEARAKAGVELVSQSLKKAQDALRYTELTSPYDGVVGKTFVDQHEQVNV 199

Query: 186 GQQIVNIHNIDSVEVLIQLPDRLYATQPTASELAKIETVVRVPSGQVYPARIKEFTTEPD 245
           G +I+ IH  + +  ++ +P+    +Q    +L     V      +  PA + +  + PD
Sbjct: 200 GTKILTIHRPERLNAVVDVPE----SQIWNLKLGTEGQVTWFEGTEAVPAVVAKIASVPD 255

Query: 246 PATGTFTVTLSLPMPEQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDK 305
               T+ VT +L    ++L+  G AV V     +    P+    IP  A+ + +      
Sbjct: 256 RLKRTYEVTFNLAHVPKQLVA-GKAVSVDVALPYASDKPI--YCIPAMAVTSRE------ 306

Query: 306 TAQYVWLLNNDNTVSKRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
           +  YV  +  ++ VS   V     +   + V+ G+ +G+ +V+AG A + +G  V +L
Sbjct: 307 SQLYVNRVIAEH-VSATPVESVSQTDDSLCVTGGLTSGESIVIAGGAFVEEGQAVTIL 363