Pairwise Alignments

Query, 369 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  106 bits (264), Expect = 1e-27
 Identities = 89/343 (25%), Positives = 158/343 (46%), Gaps = 20/343 (5%)

Query: 25  LIAGCSEPT---KLERDTLPRVKVAQAGEKVSDKLFFPAVANAAERSHLSFRVAGEISKF 81
           ++A C E     K E+  +P          VS      A   A + +++  R+AG I   
Sbjct: 18  MLAACGEEEVAKKEEQYAIPVETTTVMQGNVSSFYSTTATLEAPQEANVVSRIAGLIEAI 77

Query: 82  HVKEGARVKQGDILAEIEPTDYRLAVDNAQARFSVIDSQYRRSQPLVEKGLLAKSQFDEI 141
           +V+EG RV++G ILA I+    +  +D ++A   +I+ +  R + +  K  ++     ++
Sbjct: 78  NVEEGDRVQKGQILAVIDAKRQQYDLDRSEAEVKIIEQELNRLKKMTNKEFISADSMAKL 137

Query: 142 AAQRQIARAELELAKLRLSFTQLRAPMDGIISRVSAEQFESVQVGQQIVNIHNIDSVEVL 201
               Q A A  +LA+L++  + + +P+DGI+++   +     Q    +  I N D +  +
Sbjct: 138 EYNLQAAIARRDLAELQVKESHVVSPIDGIVAKRYVKAGNMAQEFGDLFYIVNQDELHGI 197

Query: 202 IQLPDRLYATQPTASELA-KIETVVRVPSGQVYPARIKEFTTEPDPATGTFTVTLSLPMP 260
           + LP++    Q T+  L  + +      S     A++   +   DP +GTF VTL++P  
Sbjct: 198 VHLPEQ----QLTSLRLGQEAQVFSNQQSKNAIHAKVLRISPVVDPQSGTFKVTLAVPNQ 253

Query: 261 EQELILDGMAVEVSAKGQHVGLNPLNTISIPIEAIFNADGDELDKTAQYVWLLNNDNTVS 320
              L   GM   V  K         N I++P  A+ N D    +K A YV   +N N   
Sbjct: 254 NAHL-KAGMFTRVELKYD----THENVITVPYSALINQD----NKQALYVIDGSNAN--- 301

Query: 321 KRQVRLAKASRSHVQVSEGINAGDRLVVAGVARLRDGMKVQVL 363
           +R+V +       V+V  GI  G+++V  G   L+D   V+V+
Sbjct: 302 RREVEIGYREGDSVEVVSGIKPGEQVVTRGQQNLKDQSLVEVI 344