Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1015 a.a., RND efflux transporter from Pseudomonas fluorescens FW300-N2E2

 Score =  572 bits (1473), Expect = e-167
 Identities = 327/1018 (32%), Positives = 556/1018 (54%), Gaps = 13/1018 (1%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++ + + ++   W +  + L+ G  ++ NLGR EDP+FTIK  ++ T +PGAT ++   +
Sbjct: 7    LSEWALRHQSFVWYLMFVALLMGVFSYMNLGREEDPSFTIKTMVIQTRWPGATQEETLRQ 66

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT  +EK +++L  +D V S +  G S + V + +     ++P+IW ++R+K+ND++G  
Sbjct: 67   VTDRIEKKLEELDSLDYVKSYTRPGESTVFVYLLDTTAAKEIPEIWYQVRKKINDIRGDF 126

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            P G+  P   D+FGDVYG + A TG+G S ++L DYV+ +R E+  + G+ KV + G+Q 
Sbjct: 127  PDGLQGPGFNDEFGDVYGSVYAFTGDGLSMRQLRDYVEQVRAEIHDVPGLGKVEMVGEQD 186

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E +++  S ++++ LGI  + V   L TQN V+ AG I  G E I +  +G+F   + L 
Sbjct: 187  EVLYLNFSTRKLAALGIDQREVVQSLQTQNAVTPAGVIDAGPERISVRTSGQFQSEKDLA 246

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            ++ L  R       L D+A++ RGYV+  + +  FNG  A+ + ++  +G N+ + G+  
Sbjct: 247  NVNL--RLNDRFYRLADIADISRGYVDPATPMFRFNGTPAIGLAIAMKKGGNIQDFGKAL 304

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
              R++EL    P+G+ +  V  Q + V+++V GF  +L +AV IV++V    +G+R+GL+
Sbjct: 305  HARMSELTADLPVGVGVHTVSDQAEVVEEAVGGFTSALFEAVIIVLVVSFVSLGVRAGLV 364

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            +   + L +   F+FM+Y  I +QRISLGAL+IALG+LVD+A++ VE ++   +KG ++ 
Sbjct: 365  VACSIPLVLAMVFLFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEKGDSKD 424

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            QAAT   T T +P+L  T++ V  F PIGL+  + GEY  TLF V+ +++++SW  A+  
Sbjct: 425  QAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWIVAVLF 484

Query: 502  TPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYG 561
             P            P S E      G I   +   L + MR  W  +G+ VL    S++ 
Sbjct: 485  APVIGVHILSTNVKPHSAE-----PGRIGRAFNGGLLWAMRNRWWAIGITVLLFVLSVFC 539

Query: 562  FTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGL 621
               V+  FFPSS  P  +VD+ +P+   +  T   +  LE  L     ++  +T  G+G 
Sbjct: 540  MRFVQNQFFPSSDRPEILVDLNLPQNASMDETRRAVDRLEATLKGDPDIERWSTYIGEGA 599

Query: 622  QRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPGG 681
             RF L    +     Y ++       +   AL  R +  L   +  I   ++ +E+GP  
Sbjct: 600  IRFYLPLDQQLQNPYYAQLVIVSKGLESRTALTERLQKRLREDFVGIGSYVQALEMGPPV 659

Query: 682  GAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYG 741
            G  I+ R+ G D   +R  A ++   +  +     I +DW E  KVL     + +AR+ G
Sbjct: 660  GRPIQYRVSGKDIDQVRKHAIELATELDKNSHIGEIIYDWNEPGKVLRIDIAQDKARQLG 719

Query: 742  ITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEYI 801
            ++  DV   +    SG  +    D   L+ +V R  + ER     ++ ++I +P  +   
Sbjct: 720  LSSDDVARLMNSIVSGSPVTQVNDDIYLIDVVGRAEDAERGSPETLQNLQIVTPGGTSIP 779

Query: 802  PLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIE--AIPLP 859
             L   T+ YE+  E PL+ R++RK  +T+ A   +  E     L ++LQP I+  A  LP
Sbjct: 780  LLAFATVRYEL--EQPLVWRRDRKPTITIKA--AVRDEIQPTDLVKQLQPAIDKFAAGLP 835

Query: 860  PGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGV 919
             GY +  GG  E S  A+  +   +PL    M    +   +SV++  +V    PL +IGV
Sbjct: 836  VGYKVATGGTVEESSKAQGPIASVVPLMLFLMATFLMIQLHSVQKLFLVASVAPLGLIGV 895

Query: 920  TTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVR 979
               L+   TP GF+A+LG L+L G++++N ++L+ QI+     G +P+ AVV+A+  R R
Sbjct: 896  VLALVPTGTPMGFVAILGILALIGIIIRNSVILVTQIDEYERDGYEPWDAVVEATEHRRR 955

Query: 980  PVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVKVPQ 1037
            P+ + A    LGMIP+  ++F+ PMA  ++ G+  AT+LTL+ +P LY  ++ ++ P+
Sbjct: 956  PILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYKIREPK 1013