Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., RND efflux transporter from Pseudomonas fluorescens FW300-N2E2

 Score =  579 bits (1492), Expect = e-169
 Identities = 334/1024 (32%), Positives = 569/1024 (55%), Gaps = 20/1024 (1%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++ + + NR I   + L+  + G  ++  LG+ EDP FT K  ++ T++PGAT ++V  +
Sbjct: 5    LSEWALRNRQIVLFLMLLLAVVGALSYTKLGQSEDPPFTFKAMVIRTNWPGATAEEVSRQ 64

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT  +EK + +    + + S S  G SQ+T   +++     +P++W ++R+K++D++  L
Sbjct: 65   VTERIEKKLMETGDYERIVSFSRPGESQVTFMARDSLHSVQIPELWYQIRKKISDIRHTL 124

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            PPG+  P   D+FG  +G + A+TG+G+ Y  L DY D ++ +L+ +  V KV + G Q 
Sbjct: 125  PPGIQGPFFNDEFGTTFGNIYALTGDGFDYAVLKDYADRIQIQLQRVKDVGKVELLGLQD 184

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E+++IE+S  +++TLG+    V   L  QN VS AG    GSE +++  +G F  VE++ 
Sbjct: 185  EKIWIELSNVKLATLGLPLAAVQQALEEQNAVSTAGFFETGSERLQLRVSGNFQTVEEIR 244

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            +  +  R A     + D+A+V+RG+ + P+  + F G+ A+ + V+   G +++ +G+  
Sbjct: 245  NFPI--RVADRTFRISDLADVRRGFNDPPAPRMRFMGEDAIGLAVAMKDGGDILVLGKAL 302

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            +   A ++   P G+ + +V  QP  V   V  FV  L +A+ IV++V  F +GLR+G++
Sbjct: 303  EVDFARIQNTLPAGMQLRKVSDQPAAVKTGVGEFVQVLVEALTIVLLVSFFSLGLRTGMV 362

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            + L + L +  TF  M Y  I L +ISLGALV+ALG+LVD+AI+ VE + I  ++G  R+
Sbjct: 363  VALAIPLVLAMTFAAMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGFDRI 422

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +AA+   T T +P+L  T+I    F PI  ++  TGEY  ++F V+ ++L+ SW  A+  
Sbjct: 423  KAASFAWTSTAFPMLTGTLITAAGFLPIATAQSGTGEYTRSIFQVVTLALLASWVAAVVF 482

Query: 502  TPFFADLF------FRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGL 555
             P+  +            K   +  ++DPY    +   RR +E+C+RR    + + VL  
Sbjct: 483  VPYLGEKLLPDLAKIHAAKHGTADGQADPYGTPFYQRVRRMVEWCVRRRKTVIILTVLLF 542

Query: 556  AASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTT 615
              S+  F  V Q FFP+S     MVD+ + EG  +  T   +  LE  L     +D+   
Sbjct: 543  VGSVVLFRFVPQQFFPASGRLELMVDLKLQEGASLSNTAEQVKRLEALLKDHAGIDNYVA 602

Query: 616  TAGKGLQRFMLTYS---PEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKL 672
              G G  RF L      P  S+A +  +   + D + L + +    A L+ ++P +  ++
Sbjct: 603  YVGTGSPRFYLPLDQQLPASSFAQFVVLAKTIEDREPLRSWLI---ATLNEQFPTLRSRV 659

Query: 673  KQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQF 732
             ++E GP  G  ++ R+ G     +R++A +V + +  +P   N+  DW E +KV+    
Sbjct: 660  TRLENGPPVGYPVQFRVTGEHIEKVRALARKVAEKVRENPYVTNVHLDWEEPSKVVYLNV 719

Query: 733  NESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKI 792
            ++ +AR  G++ A +  FL  S +G ++  YR+   L+ I+ R    ER ++  +  + +
Sbjct: 720  DQDRARALGVSTATLASFLRSSLTGSSVSQYREDNELIEILLRGTVHERTELSLLPSLAV 779

Query: 793  WSPALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQ 852
             +         Q  TL Y   +E+ +I  +NR   +TV A  D+ G+E  ATL Q++ P 
Sbjct: 780  PTDNGKSVALSQIATLEY--GFEEGVIWHRNRLPSVTVRA--DIYGKEQPATLVQQIFPT 835

Query: 853  IEAI--PLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWL 910
            +E I   LP GY LE GG  E S   + S+   +PL  + +  + +    S   + +V+L
Sbjct: 836  LEPIRAQLPDGYLLEVGGTVEDSARGQKSVNAGVPLFIVVVLTLLMLQLRSFSRTAMVFL 895

Query: 911  TVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAV 970
            T PL +IGVT  LL    PFGF+A+LG ++LSGM+++N ++L+DQIE ++ +G  P+ A+
Sbjct: 896  TAPLGLIGVTLFLLMFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIKAGLSPWQAI 955

Query: 971  VDASLSRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLF 1030
            ++A++ R RP+ + A+  +L MIPL   +FF PMAV IM GL  AT LTL+ +P LY  +
Sbjct: 956  IEATVRRFRPIVLTALAAVLAMIPLSRSLFFGPMAVAIMGGLIVATALTLLFLPALYAAW 1015

Query: 1031 HHVK 1034
              VK
Sbjct: 1016 FRVK 1019