Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1056 a.a., heavy metal efflux pump (cobalt-zinc-cadmium) from Pseudomonas stutzeri RCH2

 Score =  298 bits (763), Expect = 1e-84
 Identities = 274/1060 (25%), Positives = 492/1060 (46%), Gaps = 98/1060 (9%)

Query: 34   WMVSLIFLIGGTAAFFNLGRLED---PAFTIKDAMVVTSYPGATPQQVEEEVTYPLEKAI 90
            W+V L  L       ++  +L     P  T     + T+ PG +P +VE+ +TYPLE  +
Sbjct: 14   WLVMLAVLGMAALGAYSYQKLPIDAVPDITNVQVQINTAAPGYSPLEVEQRITYPLETVM 73

Query: 91   QQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALPPGVNPPL- 149
              L  +++  S+S  GLSQITV  +         Q+ +E   ++   K  LP GV P L 
Sbjct: 74   AGLPKLEQTRSLSRYGLSQITVIFEEGTDIYFARQLVNE---RLGGAKDQLPDGVTPTLG 130

Query: 150  -VIDDFGDVYGILL-----AVTGEGYSY-----KELLDYVDYLRRELELIDGVSKVSVSG 198
             +    G++Y   +     A   +G  Y     +E+ D++  ++ ++  + GV++++  G
Sbjct: 131  PISTGLGEIYFWTVEAEEGATKSDGTPYTPADLREIQDWI--IKPQVRNVPGVTEINTIG 188

Query: 199  QQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVE 258
               ++  I  +   + + G++ Q +   +   N    AG I    E   +   G+   VE
Sbjct: 189  GYAKEYQIAPNPDTLRSFGLTLQDLIEAVEQNNNNLGAGYIEKRGEQYLVRAPGQMQSVE 248

Query: 259  KLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQ-GVNVVEV 317
             + D ++S       + +RDVA V+ G  E+ +   T NG+  + +G +F   G N   V
Sbjct: 249  DIRDTLISNVDGTP-VRIRDVATVEVGK-ELRTGAATENGREVV-LGTAFMLIGENSRVV 305

Query: 318  GQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMG-L 376
             +  D ++ E+    P G+    VY +   VDK++S    +L +   +V+++L  F+G +
Sbjct: 306  SRAVDDKMKEINLSLPEGVKAITVYDRTVLVDKAISTVKKNLTEGAILVVVILFLFLGNI 365

Query: 377  RSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGIL----- 431
            R+ +L  L++ L++L TF  M   ++    +SLGAL    G+++D A+V+VE  +     
Sbjct: 366  RAAILTALVIPLSMLFTFTGMVANQVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAH 423

Query: 432  IGTQKGRT-----RLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTV 486
              +  GR      RL        + + PLL   +I +  + PI       G+    +FT 
Sbjct: 424  AQSHHGRALTLSERLHEVFAAAKEVRRPLLYGQLIIMIVYLPIFALTGVEGK----MFTP 479

Query: 487  LLISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFV----VYRRFLEFCM- 541
            +  +++ + F AI L+  F         A   G+     + F+       Y   L+  M 
Sbjct: 480  MAFTVVTALFGAIILSVTFVP----AAVALFIGKRVTEKENFLIRNAKRAYAPALDAVMA 535

Query: 542  -RRAWLTMGVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLEL 600
             + A LT  V+V+ + + L G +++   F PS     F +       T +  +  +  +L
Sbjct: 536  NKPAVLTFAVVVV-ILSGLVG-SRMGSEFVPSLNEGDFAIQALRVPATSLSQSVEMQQQL 593

Query: 601  EKWLSAQ----ESVDSVTTTAG-------KGLQRFMLTYSPEKSYAAYGEITTRVTDYQQ 649
            E+ L  +    E + + T TA          +    +   P++ +   G+   ++    Q
Sbjct: 594  ERKLMDEFPEIERIFARTGTAEVASDAMPPNISDGYVMLKPQEQWPDPGKSRNQLLSEVQ 653

Query: 650  LAALMARFRAHLDARYPQINYKLKQI------ELGPGGGAKIEARIVGSDPTVLRSIAAQ 703
             +A          A  P  NY+  Q       EL  G  A +  +I G D  VL S AA+
Sbjct: 654  ASA----------AELPGNNYEFSQPIQLRFNELISGVRAAVAVKIYGDDMDVLNSTAAE 703

Query: 704  VMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGVY 763
            V +V+   PGA  +  +      +L    +  Q  RYG++   V + +A++  G+  G  
Sbjct: 704  VSEVLGQVPGASEVTVEQTTGLPMLTIDIDRDQIARYGLSLDTVQQAVAVAIGGREAGTL 763

Query: 764  RDGTTLMPIVARLPEEERVDIRNIEGMKIWSP----ALSEYIPLQQVTLGYEMRWEDPLI 819
              G     IV RLP+E R D+  IE + I  P    +   YIPL +V    ++      I
Sbjct: 764  FQGDRRFDIVVRLPDEIRSDLAAIERLPIALPRELNSTISYIPLGEVAT-LDLAPGPNQI 822

Query: 820  VRKNRKRMLTVMADPDLLGEETAATL---QQRLQPQIEAIPLPPGYFLEWGGEYESSGDA 876
             R+  KR + V A+  + G +  + +   +Q++Q Q++   +P GY+++WGG +E    A
Sbjct: 823  SREEGKRRIVVSAN--VRGRDIGSFVSEAEQKIQAQVD---IPAGYWIDWGGTFEQLESA 877

Query: 877  KASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALL 936
               L   +P+  L +F++   +FN+VK+ L+V+  +P A+ G    L   + P    A +
Sbjct: 878  TKRLQIVVPVALLLVFILLFMMFNNVKDGLLVFTGIPFALTGGIVALWLRDIPLSISAGV 937

Query: 937  GFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLL 996
            GF++LSG+ + NG+V++  I      G     A+ + +L+R+RPV M A+   LG +P+ 
Sbjct: 938  GFIALSGVAVLNGLVMISFIRSLREQGLPLDTAIREGALTRLRPVLMTALVASLGFVPMA 997

Query: 997  PDI-----FFRPMAVTIMFGLGFATVLTLIVVPVLYRLFH 1031
             ++       RP+A  ++ G+  +TVLTL+V+P+LY++ H
Sbjct: 998  LNVGTGAEVQRPLATVVIGGILSSTVLTLLVLPLLYQMAH 1037



 Score = 38.1 bits (87), Expect = 3e-06
 Identities = 79/387 (20%), Positives = 151/387 (39%), Gaps = 47/387 (12%)

Query: 144  GVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ-E 202
            GV   + +  +GD   +L +   E             +   L  + G S+V+V       
Sbjct: 680  GVRAAVAVKIYGDDMDVLNSTAAE-------------VSEVLGQVPGASEVTVEQTTGLP 726

Query: 203  QVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLGD 262
             + I+I   +I+  G+S  TV   ++      +AG +  G           FD V +L D
Sbjct: 727  MLTIDIDRDQIARYGLSLDTVQQAVAVAIGGREAGTLFQGDR--------RFDIVVRLPD 778

Query: 263  LILSERGAQGLIYLRDVAEVKR--GYVEV-----------PSNVITFNGKLALNVGVSFA 309
             I S+  A   + +    E+     Y+ +           P+ +    GK  + V  +  
Sbjct: 779  EIRSDLAAIERLPIALPRELNSTISYIPLGEVATLDLAPGPNQISREEGKRRIVVSAN-V 837

Query: 310  QGVNVVEVGQRFDRRL-AELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVII 368
            +G ++       ++++ A++       ID    + Q +   K +   V      VA++++
Sbjct: 838  RGRDIGSFVSEAEQKIQAQVDIPAGYWIDWGGTFEQLESATKRLQIVV-----PVALLLV 892

Query: 369  VLLFFM---GLRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIAL-GMLVDNAI 424
             +L FM    ++ GLL+   +   + G  + +    I L  IS G   IAL G+ V N +
Sbjct: 893  FILLFMMFNNVKDGLLVFTGIPFALTGGIVALWLRDIPLS-ISAGVGFIALSGVAVLNGL 951

Query: 425  VVVEGILIGTQKGRTRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLF 484
            V++  I    ++G     A  +       P+L   ++A   F P+ L+     E    L 
Sbjct: 952  VMISFIRSLREQGLPLDTAIREGALTRLRPVLMTALVASLGFVPMALNVGTGAEVQRPLA 1011

Query: 485  TVLLISLMLSWFTAISLTPFFADLFFR 511
            TV++  ++ S    + + P    +  R
Sbjct: 1012 TVVIGGILSSTVLTLLVLPLLYQMAHR 1038