Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score =  598 bits (1543), Expect = e-175
 Identities = 341/1021 (33%), Positives = 570/1021 (55%), Gaps = 14/1021 (1%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++A+ + NR I   + L+  I G  ++  LG+ EDP FT K  ++ T +PGAT +++  +
Sbjct: 5    LSAWALQNRQIVVYLMLLLAIVGALSYSKLGQSEDPPFTFKAMVIQTQWPGATAEEMSRQ 64

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT  +EK + +    + + S S  G S +T   +++    D+P +W ++R+K+ D++   
Sbjct: 65   VTERIEKKLMETGEYERIVSFSRPGESNVTFMARDSMRSKDIPDLWYQIRKKIGDIQHTF 124

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            PPGV  P   D+FG  +G + A+TG G+ Y  L DY D ++ +L+ +  V KV + G Q 
Sbjct: 125  PPGVRGPFFNDEFGTTFGNIYALTGSGFDYAILKDYADRIQLQLQRVKSVGKVELIGLQD 184

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E+++IE+S  +++TLG+  + V   L  QN V+ AG +   S+ +++  TG F+ V+++ 
Sbjct: 185  EKIWIELSNVKLATLGVPLEAVRQALEAQNAVTAAGFVETISDRVQLRVTGSFETVKQIR 244

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            D  +  R A     + DVAEV RG+ + P+  + F G+ AL + VS   G +++ +GQ  
Sbjct: 245  DFPI--RVAGRTFRIGDVAEVHRGFNDPPAPRMRFMGEPALGLAVSMKSGGDILVLGQAL 302

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            ++  A L+ + P G+ + +V  QP  V   V  FV  L +A+ IV++V  F +G+R+GL+
Sbjct: 303  EQEFARLQQELPAGMQLRKVSDQPAAVKTGVGEFVKVLIEALVIVLLVSFFSLGVRTGLV 362

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            + L + L +  TF  M Y  I L +ISLGALV+ALG++VD+AI+ VE + I  ++G  RL
Sbjct: 363  VALSIPLVLAMTFAAMSYLDIGLHKISLGALVLALGLMVDDAIIAVEMMAIKMEQGYDRL 422

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +AA+   T T +P+L  T+I    F PI  +  +TGEY  ++F V+ ISL+ SW  A+  
Sbjct: 423  KAASFAWTSTAFPMLTGTLITAAGFLPIATANSSTGEYTRSIFQVVAISLIASWIAAVMF 482

Query: 502  TPFFADLFF------RGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGL 555
             P   +            K   S E  DPY    +   RR + FC+RR    + + +   
Sbjct: 483  VPLIGEKLLPDLAKKTAHKHGTSSEGHDPYATPFYQRVRRLVTFCVRRRKTVILLTLAIF 542

Query: 556  AASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTT 615
            AA++  F  V Q FFP+S     MVD+ + EG  ++AT+A +  LE+ L  +  +D+   
Sbjct: 543  AAAVVLFRLVPQQFFPASGRLELMVDLKLAEGASLKATEAEVRRLEELLKERAGIDNYVA 602

Query: 616  TAGKGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQI 675
              G G  RF L    +    ++ +        +   AL +     +   +P +  ++ ++
Sbjct: 603  YVGTGSPRFYLPLDQQLPATSFAQFVVLADSIESREALRSWLIERMREDFPSLRGRVTRL 662

Query: 676  ELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNES 735
            E GP  G  ++ R+ G    V+R +A QV   +  +P   N+  DW+E +K++    ++ 
Sbjct: 663  ENGPPVGYPVQFRVTGEHIDVVRGLARQVAAKVNENPHVANVHLDWQEPSKMVRLNVDQD 722

Query: 736  QARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSP 795
            +AR  G+T A++  FL  +F+G ++  +R+   L+ I+ R  E ER+++  +  + I + 
Sbjct: 723  RARALGVTTAELSGFLRRTFTGSSVSQFREDNELIEILLRGTERERLELSMLPSLAIPTE 782

Query: 796  ALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEA 855
            +    +PL QV    E  +E+ +I  +NR   +TV A  D+ GE+  A L + ++P +  
Sbjct: 783  S-GRSVPLSQVAT-LEYGFEEGVIWHRNRLPTVTVRA--DVYGEQQPAALVREIEPTLAE 838

Query: 856  I--PLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVP 913
            I   LP GY LE GG  E S   + S+   MPL  + +  + +    S   S +V+LT P
Sbjct: 839  IRDQLPGGYLLEVGGTVEDSERGQRSVNAGMPLFVIVVLTLLMAQLKSFSRSAMVFLTAP 898

Query: 914  LAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDA 973
            L +IGV   LL    PFGF+A+LG ++LSGM+++N ++L+DQIE ++ +G+  + A+V+A
Sbjct: 899  LGIIGVALFLLLFGQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIGAGQARFSAIVEA 958

Query: 974  SLSRVRPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHV 1033
            ++ R RP+ + A+ ++L MIPL   IFF PMAV IM GL  AT LTL+ +P LY  +  V
Sbjct: 959  TVRRFRPIVLTALASVLAMIPLSRSIFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRV 1018

Query: 1034 K 1034
            +
Sbjct: 1019 R 1019