Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1028 a.a., AcrB/AcrD/AcrF family transporter (RefSeq) from Shewanella amazonensis SB2B

 Score = 1206 bits (3120), Expect = 0.0
 Identities = 593/1013 (58%), Positives = 778/1013 (76%), Gaps = 1/1013 (0%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            VA YF+ N VISWM +LI L+GG+ AF  LG+LEDP FTIKDA+V+T YPGAT  +VEEE
Sbjct: 3    VAGYFVKNSVISWMFTLILLLGGSVAFLGLGQLEDPPFTIKDAVVITLYPGATSTEVEEE 62

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VTYP+EKAIQ L YVD++ S+S+ GLSQITVTMKN YGPD LPQIWDELRRKVND+  +L
Sbjct: 63   VTYPVEKAIQALPYVDKIKSLSTSGLSQITVTMKNTYGPDQLPQIWDELRRKVNDMAASL 122

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            PPG   P+V DDFGDVYGI+L +TG+ +SY+EL DYVDY++RELEL+ GV KVS++G+Q+
Sbjct: 123  PPGAQHPMVNDDFGDVYGIMLMITGKDFSYRELKDYVDYVKRELELVPGVGKVSLAGEQK 182

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            EQ+F+E+S+ + ++  + P  + NLL++QN+VSDAG I++  + ++I  +G    VE+L 
Sbjct: 183  EQIFVEMSVNKAASSNLDPNLIANLLNSQNMVSDAGNIQVSGDNLKIRTSGSSRSVEELQ 242

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            +LI+       LIYL+DVA V+RGY E+P+NV+++N + A+N+G+SF+ GVNVV VG+  
Sbjct: 243  ELIIPGTQGDKLIYLKDVATVRRGYQEIPTNVLSYNRERAINLGISFSSGVNVVAVGKAV 302

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            D +LA++   +P GI I  +Y+QP EVD SV  FV +L  AV IVI VLLFFMG++SG+L
Sbjct: 303  DDKLAQIDSARPAGIKIETMYNQPVEVDNSVGSFVWNLIAAVVIVIGVLLFFMGVKSGIL 362

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            IGLIL LT LGTF+ M   +I+LQRISLGAL+IALGMLVDNAIVVVEGILIG Q+G+T L
Sbjct: 363  IGLILFLTCLGTFVLMLQAEIELQRISLGALIIALGMLVDNAIVVVEGILIGRQQGKTTL 422

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +A+  IV QT WPLLGATVIA+TAFAPIGLS D+TGE+ G+LF VLL SL LSW TAI++
Sbjct: 423  EASDAIVKQTMWPLLGATVIAITAFAPIGLSPDSTGEFAGSLFWVLLFSLFLSWITAITI 482

Query: 502  TPFFADLFFRGQ-KAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLY 560
            TPFFA LFF  + +    G+  DPY G  F +Y+  L+ CMR  ++++  +VL   AS+ 
Sbjct: 483  TPFFASLFFGDKGEEQLEGQTKDPYGGAFFTLYKVALDVCMRYRFISVIAVVLAFVASVV 542

Query: 561  GFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKG 620
            GF  VKQ+FFP STTP+F+VDVW+PEGTDIR T  I+  +E   +    V+ V +T GKG
Sbjct: 543  GFGYVKQSFFPPSTTPIFLVDVWLPEGTDIRETQRIVTAMEDKAAQLADVEFVASTVGKG 602

Query: 621  LQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPG 680
              RFMLTY+PEK+YA+YG+I  R + ++ L  +M +FR  ++A +PQ   K K++E+GP 
Sbjct: 603  FPRFMLTYAPEKNYASYGQIAIRTSAFETLEGVMTQFRREMEAGFPQTQLKFKRLEVGPS 662

Query: 681  GGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRY 740
              AKIEARI G DP VLR++ A+V  V  A PG  N+RHDWRER K + P+FNE+QARR 
Sbjct: 663  TDAKIEARISGPDPDVLRTLGAEVQAVFAATPGTVNVRHDWRERVKYIAPRFNETQARRL 722

Query: 741  GITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEY 800
            GI K++VD+ L  SF+G  IGVYR+GT L+ IV RLP++ERVDI ++E ++IWSP L+  
Sbjct: 723  GIVKSEVDKALKFSFAGLQIGVYREGTNLLSIVGRLPDDERVDIESMESIRIWSPVLNTL 782

Query: 801  IPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAIPLPP 860
            +PLQQV  G+E+++EDP+I R++RKR LTV AD D   +   A L  +++PQ+EAI +PP
Sbjct: 783  VPLQQVVDGFEVKFEDPIIQRRDRKRTLTVFADADFEYDLLPAELFAKVRPQVEAISMPP 842

Query: 861  GYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVT 920
            GY L WGGE+ESS DA+ SLF  +P+G+LFMFL+TVFLFNSV++ L++W  VPLA+IG+T
Sbjct: 843  GYELVWGGEFESSQDAQESLFAILPMGFLFMFLVTVFLFNSVRKPLVIWACVPLAIIGIT 902

Query: 921  TGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRP 980
             GLL L+ PF FMALLG LSLSGMLLKNGIVLLDQI +E++ GK+P+ AV ++++SRVRP
Sbjct: 903  LGLLVLDKPFSFMALLGMLSLSGMLLKNGIVLLDQINLEINEGKEPFQAVFESTVSRVRP 962

Query: 981  VCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHV 1033
            VCMAAVTTILGM+PL+ D FF  MA  +MFGLG ATVLTL++VPV Y +F  +
Sbjct: 963  VCMAAVTTILGMLPLITDAFFESMAAVVMFGLGVATVLTLLIVPVFYIIFFKI 1015