Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1029 a.a., efflux RND transporter permease subunit from Rahnella sp. WP5

 Score =  544 bits (1402), Expect = e-158
 Identities = 314/1016 (30%), Positives = 546/1016 (53%), Gaps = 10/1016 (0%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++A  +  R I+  + ++  + G  +FF LGR EDP FT+K   +++++PGAT Q+++++
Sbjct: 8    LSALAVRERSITLFLIILITVAGILSFFELGRAEDPPFTVKQMTIISAWPGATAQEMQDQ 67

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            V  PLEK +Q+L + D   + +  GL+   +++K++  P  + + + + R+K+ D    L
Sbjct: 68   VAEPLEKRMQELKWYDRSETYTRPGLAFTMLSLKDSTPPSQVQEEFYQARKKLGDETKNL 127

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            P GV  P+V D+F DV   L A+  +G   + L+   + LR+++  + GV KV++ G+Q 
Sbjct: 128  PAGVIGPMVNDEFSDVTFALFALKAKGEPQRLLVRDAESLRQQILHVPGVKKVNIIGEQA 187

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            E++F+  S  R++TLGISPQ +F+ L++QN+++ AG+I      + I   G FD +EK+ 
Sbjct: 188  ERIFVSFSHDRLATLGISPQDIFSALNSQNVLTPAGSIDTKGPQVFIRLDGAFDKLEKIR 247

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            +  +  +G    + L DVA V+RGY +  + +I   G+ AL +G+    G N +++G+  
Sbjct: 248  ETPIVVQGR--TLQLSDVATVERGYEDPATFLIRNQGEPALLLGIVMRDGWNGLDLGKAL 305

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            D   A++    P+G+ + +V  Q   +  +V  F++    A+ +V++V    MG R G++
Sbjct: 306  DAETAKINEGMPLGMTLTKVTDQSVNISSAVDEFMIKFFVALLVVMVVCFVSMGWRVGVV 365

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            +   + LT+   F+ M+    +  RI+LG+L++ALG+LVD+AI+ +E +++  ++G  R+
Sbjct: 366  VAAAVPLTLAIVFVVMEASGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDRI 425

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
            +A+    + T  P+L  T++    F P G ++   GEY   +F ++ I+L+ SW  A+  
Sbjct: 426  KASAYAWSHTAAPMLAGTLVTAVGFMPNGFAQSTAGEYTSNMFWIVGIALIASWIVAVVF 485

Query: 502  TPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLYG 561
            TP+         K    G  +  Y    +  +RR L   + R W+  G ++     ++ G
Sbjct: 486  TPYLGVKMLPKIKT-VEGGHAAIYDTRHYNRFRRVLTRVIARKWIVAGTVIAVFTVAILG 544

Query: 562  FTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKGL 621
               VK+ FFP+S  P  +V+V MP GT I  T A   ++E WL  Q+    VT+  G+G 
Sbjct: 545  MGLVKKQFFPTSDRPEVLVEVQMPYGTSIEQTSAATAKIEAWLRKQKEAKIVTSYIGQGS 604

Query: 622  QRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFR-AHLDARYPQINYKLKQIELGPG 680
             RF L  +PE    ++ +I       +   AL  R R A      P+   ++ Q+  GP 
Sbjct: 605  PRFYLAMAPELPDPSFAKIVVLTDSQEAREALKFRLREAAASGLAPEARVRVTQLVFGPY 664

Query: 681  GGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRY 740
                +  R++G DP  LR IA +V  VM A P    +  DW  R   L    N+ + +  
Sbjct: 665  SPYPVAYRVMGPDPDKLREIADKVEKVMQASPMMRTVNTDWGPRVPALHFTLNQDRLQAV 724

Query: 741  GITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEY 800
            G+T   V + L    SG  I   R+    + ++ R   + R+D   I G  +   +  + 
Sbjct: 725  GLTSNAVAQQLQFLLSGVPITSVREDIRSVQVMGRAAGDIRLDPEKIAGFTLVGSS-GQR 783

Query: 801  IPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMAD--PDLLGEETAATLQQRLQPQIEAIPL 858
            IPL Q+    E++ EDP++ R++R   +TV  D   +L   + +  + + LQP I+   L
Sbjct: 784  IPLSQIG-EVEVQMEDPVLRRRDRTPTITVRGDIAENLQPPDVSTAMIKALQPVIDT--L 840

Query: 859  PPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIG 918
            P GY +E  G  E SG A  ++    P+      LI +    S+   ++V+LT PL +IG
Sbjct: 841  PAGYRIEQAGSIEESGKATEAMAPLFPIMIAMTLLIIILQVRSMSAMVMVFLTAPLGLIG 900

Query: 919  VTTGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRV 978
            V   LL  N PFG  AL+G ++LSG+L++N ++L+ QI      G  P+ AVV+A++ R 
Sbjct: 901  VVPTLLLFNQPFGINALVGLIALSGILMRNTLILIGQIHHNEQEGLPPFHAVVEATVQRA 960

Query: 979  RPVCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHHVK 1034
            RPV + A+  IL  IPL   +F+  +A T++ G    T++TL+ +P +Y ++  ++
Sbjct: 961  RPVLLTAMAAILAFIPLTHSVFWGTLAYTLIGGTFGGTIITLVFLPAMYAIWFRIR 1016