Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1023 a.a., acriflavin resistance protein (RefSeq) from Shewanella loihica PV-4

 Score =  342 bits (878), Expect = 6e-98
 Identities = 280/1036 (27%), Positives = 494/1036 (47%), Gaps = 58/1036 (5%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            + A   N R+ S +++L+ ++ G  A  +L R+EDP+ T + A VVT YPGA+ ++VE  
Sbjct: 2    IKALVENGRLASLVIALL-IVAGLGAITSLPRMEDPSITNRFASVVTHYPGASAERVEAL 60

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT  LE  +++L  +  V S S  G+S I + +K+     D   +W   R  VND K  L
Sbjct: 61   VTEVLENQLRRLEELKLVQSTSRPGISVIQLELKDRITETD--PVWSRARDLVNDAKNLL 118

Query: 142  PPGVNPPLVIDDFGDVYGILLAVT--GEGYSYKELLD-YVDYLRRELELIDGVSKVSVSG 198
            PP     L+ D  G     +L +   G G   +++L+ Y   L+ +L LI G   V + G
Sbjct: 119  PPAAQNALLDDQLGYANTAILGLVWQGAGEPRQDILNRYAKELQSQLRLIPGTDFVKLYG 178

Query: 199  QQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVE 258
               E++ ++I  + ++ +G+S   +  +L+  +    AG I   +    +  +GE D V 
Sbjct: 179  APTEEILVQIDAQNVNRIGLSAAAIAQILANADTKVSAGEITNDAFRALVEVSGELDSVT 238

Query: 259  KLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVG 318
            ++  + L       +I L +VA V+R      +++        + V         V    
Sbjct: 239  RIRQVPLKVDENGQIIRLGEVASVQRQPKTPAASIALIEQAQGIMVSARMLNNTRVDLWL 298

Query: 319  QRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRS 378
            Q+  R + +++      ++I  ++ Q       +S  + SL     I+++VL+  +GLR+
Sbjct: 299  QQVHRVVEKVQGDLSSNVEIQWLFDQEGYTTTRLSDLIASLLLGFIIILVVLMLTLGLRN 358

Query: 379  GLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGR 438
             +++ L L LT L T   M+Y  + + ++S+  LV+ALG++VDNAIV+V+ I    ++G 
Sbjct: 359  AVIVSLSLPLTALFTLACMKYVGLPIHQMSVTGLVVALGIMVDNAIVIVDAIAQRRRQGL 418

Query: 439  TRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTA 498
             RL A  + +     PL G+T+  + AF PI L   A GE+ G +   ++ +L+ S+  +
Sbjct: 419  DRLSAVGETLKHLWLPLAGSTITTMLAFTPIILMPGAAGEFVGGIAISVIFALLGSYLIS 478

Query: 499  ISLTPFFADLFFRGQKAPASGEESDPYQ-GFIFVV----YRRFLEFCMRR---AWLTMGV 550
             +L   FA  F       A G+ +  YQ G  F +    + + L   ++R   A + +G+
Sbjct: 479  HTLIAGFAGRF------GAEGDATHWYQRGVNFPIIARAFSKTLHIALKRPLLAGVVIGI 532

Query: 551  L-VLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQES 609
            L + G  AS     ++ + FFP S   MF ++V +   + I  T A++  ++  L A   
Sbjct: 533  LPITGFIAS----GQMTEQFFPPSDRDMFQIEVHLAPQSSIENTRALVERIDAKLRATGE 588

Query: 610  VDSVTTTAGKGLQRFMLTYSPEKSYAA-YGEITTRVTDYQQLAALMARFRAHLDARYPQI 668
            +  +    G     F       +  AA Y +   +V D+++   L+ R +  LDA +P+ 
Sbjct: 589  MQRLDWVIGGNAPSFYYNLLQRQQGAANYAQAMIKVADFERANQLIPRLQTQLDAEFPEA 648

Query: 669  NYKLKQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVL 728
               ++++E GP   A +E RI G +   LR I  +V  ++       + R         +
Sbjct: 649  QILVRKLEQGPPFNAPVELRIYGHNLDTLREIGDEVRRILITTDHVLHTRATLSAGAPKV 708

Query: 729  EPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVAR---LPEEERVDIR 785
              Q NE  ++  G++  D+   + M+ +G   G   + T  +PI  R   L  E++ ++ 
Sbjct: 709  WFQVNEDASKMSGLSLTDIANQIQMATTGINGGSILEQTESLPIRVRTQDLMREQQTELS 768

Query: 786  NI-----EGMKIWSPALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMA--DPDLLG 838
             I      G+ I   AL+       V+LG         I R++ +R+ T+ A  + D+L 
Sbjct: 769  QINLLSSNGVGIPLSALAS--SRIDVSLG--------AIPRRDGQRVNTIEAYLESDVLP 818

Query: 839  EETAATLQQRLQPQIEAIPLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFL 898
            ++    +  + + +I+A+ LP GY +E GGE     +A  +L   + L    +    V  
Sbjct: 819  QQ----VLNQAKTRIDALTLPAGYRIEVGGESAKRNEAVGNLLSNIVLVITLLLATVVLS 874

Query: 899  FNSVKESLIVWLTVPLAVIGVTTGLLAL---NTPFGFMALLGFLSLSGMLLKNGIVLLDQ 955
            FNS + + I+ L+   AV     GLLA+   N PFGF  ++G L L G+ +   IV+L +
Sbjct: 875  FNSFRLTGIILLS---AVQSAGLGLLAVYLFNYPFGFTVIIGLLGLMGLAINAAIVILAE 931

Query: 956  IEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLL--PDIFFRPMAVTIMFGLG 1013
            +E      +    A+V    S  R +    +TTI G +PL+     F+ P A+ I  G  
Sbjct: 932  LEDMPDRREASIDAIVQVVSSCGRHIGSTTITTIGGFLPLIIAGGGFWPPFAIAIAGGTA 991

Query: 1014 FATVLTLIVVPVLYRL 1029
              T+L+L+ VP +Y+L
Sbjct: 992  LTTLLSLVWVPTMYQL 1007