Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  348 bits (892), Expect = 1e-99
 Identities = 265/1021 (25%), Positives = 482/1021 (47%), Gaps = 28/1021 (2%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            + A+  N R++S +++L+ L+ G  A  +L R EDP  T + A V+T YPGA+ ++VE  
Sbjct: 2    IKAFVENGRLVSLVIALL-LVAGFGAMSSLPRTEDPHITNRFASVITPYPGASAERVEAL 60

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT  LE  +++L  +  + S S  G+S I + +K+     D   +W   R  + D + +L
Sbjct: 61   VTEVLENQLRRLEEIKLIQSTSRPGISVIQLELKDTV--TDTDPVWSRARDLLADARNSL 118

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKE---LLDYVDYLRRELELIDGVSKVSVSG 198
            P  +  P + D  G  Y  +L++     S      L  Y   L+  L L+ G   V + G
Sbjct: 119  PDDIQTPTLDDQVGYAYTAILSLVWNDSSQPRVDMLNRYAKELQSRLRLLAGTDFVKLYG 178

Query: 199  QQQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVE 258
              +E++ +++   ++S L ++P T+ N+L + +    AG I        +  +GE D   
Sbjct: 179  APEEEILVQLDGYKMSQLQLTPGTIANILRSADSKIAAGEINNNHFRALVEVSGELDSQS 238

Query: 259  KLGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVG 318
            ++  + L       +I L D+A + R       ++   +G+  + V         V    
Sbjct: 239  RIRQVPLKVDSDGQIIRLGDIATISRQPKSPADSIGLVDGEQGVFVAARMLNNTRVDIWQ 298

Query: 319  QRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRS 378
             +  + + E     P  I +  +  Q     + + G V++L Q   I++ VLL  +GLR+
Sbjct: 299  GQVKQLVDEFNIDLPANIKVEWLLEQNSYTSERLGGLVINLIQGFVIILSVLLLTLGLRN 358

Query: 379  GLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGR 438
             +++ + L LT L T   M+Y  + + ++S+  LV+ALG++VDNAIV+V+ I    Q+G 
Sbjct: 359  AVIVAISLPLTALFTLACMKYIGLPIHQMSVTGLVVALGIMVDNAIVIVDAIAQRRQQGM 418

Query: 439  TRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTA 498
            +RL A T+ +     PL G+T+  + AFAPI L   ATGE+ G +   ++ +L  S+  +
Sbjct: 419  SRLNAVTEALHHLWLPLAGSTITTILAFAPIVLMPGATGEFVGGIAMAVMFALFGSYLIS 478

Query: 499  ISLTPFFADLFFRGQKAP---ASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGL 555
             +L    A  F    K P     G       G+    ++  L F + R  L+  ++    
Sbjct: 479  HTLIAGLAGRFSLEGKNPIWYQHGINLPLVSGY----FQASLRFALNRPRLSAILIGTIP 534

Query: 556  AASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTT 615
                Y   K+ + FFP S   MF +++++     +  T + +  ++K L   E +  V  
Sbjct: 535  LLGFYASGKMTEQFFPPSDRDMFQIELYLAPHVSLENTLSQVYLMDKQLHQIEGITQVDW 594

Query: 616  TAGKGLQRFMLTYSPEKSYAA-YGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQ 674
              G     F    +  +  A  Y +   +  D+++  AL+   +   D  +P+    +++
Sbjct: 595  VVGGNTPSFYYNLTQRQQGATNYAQAMIKTIDFERANALIPVLQQRFDKAFPEAQVLVRK 654

Query: 675  IELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNE 734
            +E GP   A +E  I G D   LR++  ++  ++ A P   + R      +  +  Q NE
Sbjct: 655  LEQGPPFNAPVELMIFGPDLETLRTLGDEIRHILAATPDVIHTRATLSAGSPKVLLQVNE 714

Query: 735  SQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWS 794
              +   G++  ++   + MS +G   G   + T  +PI  RL E  R     +  +++ +
Sbjct: 715  DASLISGLSLTNIARQVQMSTTGVIGGSVLEQTESLPIRVRLGENSREQASRLSEIQLMT 774

Query: 795  PALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIE 854
            P+    +PL  ++   E++     I R+N +R+ T+ A   ++     A +   ++ ++ 
Sbjct: 775  PS-GTAVPLSALSHN-EVQVSRGAIPRRNGQRVNTIEA--YIVSGVLPAQVLNDVKDKVA 830

Query: 855  AIPLPPGYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPL 914
            AI LP GY +E GGE     +A  +L   + L    +    V  FNS + + I+ L+   
Sbjct: 831  AIKLPAGYRIEIGGESAKRNEAIGNLLSNIILVVTLLLATVVLSFNSFRLTAIILLS--- 887

Query: 915  AVIGVTTGLLAL---NTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVV 971
            A+     GLLA+     PFGF  ++  L L G+ +   IV+L ++E E+ + +    AV+
Sbjct: 888  ALQSAGLGLLAVFVFGYPFGFPVIIALLGLMGLAINAAIVILAELE-ELPAARMGDKAVI 946

Query: 972  DASLSRV-RPVCMAAVTTILGMIPLL--PDIFFRPMAVTIMFGLGFATVLTLIVVPVLYR 1028
             +++S   R +    +TT+ G IPL+     F+ P A+ I  G    T+L+L+ VP +Y 
Sbjct: 947  VSTVSSCGRHISSTTITTVGGFIPLIIAGGGFWPPFAIAIAGGTLLTTLLSLVWVPTMYL 1006

Query: 1029 L 1029
            L
Sbjct: 1007 L 1007