Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1020 a.a., multidrug transporter AcrB from Klebsiella michiganensis M5al

 Score = 1005 bits (2598), Expect = 0.0
 Identities = 497/1012 (49%), Positives = 706/1012 (69%), Gaps = 2/1012 (0%)

Query: 22   VAAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEE 81
            ++  FINN +  W+  L+  IGG  A  N+GRLEDPAFTIK A+V+T YPGA+ QQVEEE
Sbjct: 3    ISRQFINNPIRVWLTILLLGIGGIFALLNIGRLEDPAFTIKTAVVITHYPGASAQQVEEE 62

Query: 82   VTYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGAL 141
            VT PLE A+QQL Y+D V+SISS GLSQITV + ++Y   +LPQIWDELRR+V D     
Sbjct: 63   VTLPLENALQQLPYLDNVSSISSNGLSQITVNIASHYHSSELPQIWDELRRRVGDAARQF 122

Query: 142  PPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQQQ 201
            PPGV  P V DDFGDV+G   A++G+ ++  EL+ Y + LRREL L+ GV KV++ G   
Sbjct: 123  PPGVASPFVNDDFGDVFGFFFAISGDSFTNPELVRYAEQLRRELVLVPGVGKVAIGGAIP 182

Query: 202  EQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEKLG 261
            +Q+ I+IS+ +++  GI+   +  +LS  N+VS+AG I+ GSE IR+HPTGEF ++++LG
Sbjct: 183  QQINIDISLAKMAARGITLTQLAAILSRLNVVSNAGEIKSGSESIRLHPTGEFANLDELG 242

Query: 262  DLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITFNGKLALNVGVSFAQGVNVVEVGQRF 321
            DL++S  G+     LRD+A + RG  E P+++   NG+ A+ +GVSF  GVNV++VG+  
Sbjct: 243  DLLISPHGSGTATRLRDIATLSRGLSETPASIYHANGRQAVTMGVSFIPGVNVIDVGRAL 302

Query: 322  DRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIVLLFFMGLRSGLL 381
            + +L ++  ++P GI I   Y Q  EV  SV+GF+ +   A+AIV+ VLL FMG+RSG++
Sbjct: 303  ESKLEQMSAEKPAGISIDLFYDQAAEVAHSVNGFITNFLMALAIVVGVLLIFMGVRSGII 362

Query: 382  IGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVEGILIGTQKGRTRL 441
            I L L L VLGT + M  + I+LQRISLGAL+IAL MLVDNAIV+VEG+LI  Q+G T L
Sbjct: 363  IALSLALNVLGTLLIMYLWGIELQRISLGALIIALSMLVDNAIVIVEGVLIARQQGSTLL 422

Query: 442  QAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLLISLMLSWFTAISL 501
             A   ++ ++  PLLGATVIA+ AFAPIGLS+D+TGEYC +LF VLLISLMLSWF+A+++
Sbjct: 423  TAINYVIRRSALPLLGATVIAILAFAPIGLSQDSTGEYCKSLFQVLLISLMLSWFSALTI 482

Query: 502  TPFFADLF-FRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTMGVLVLGLAASLY 560
            TP     + F+ Q  P +   ++PY G  + +Y++ L+  + R  LT+ ++   LAA+++
Sbjct: 483  TPVLIKWWLFKNQSQPVAQANANPYGGRFYRLYQQALQALLLRKTLTLTIMAALLAAAIW 542

Query: 561  GFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQESVDSVTTTAGKG 620
            GF  V+Q FFPSS TP+F VD+W+P GTDI  T+ +  ++E  ++ Q  V +   T G+G
Sbjct: 543  GFGSVRQNFFPSSNTPIFFVDLWLPYGTDIATTEKMTSDIETTINGQPGVVTTVATVGQG 602

Query: 621  LQRFMLTYSPEKSYAAYGEITTRVTDYQQLAALMARFRAHLDARYPQINYKLKQIELGPG 680
              RF+LTYS ++ Y+ Y +I  R+ D + + AL      ++   YPQ+N   K++  GP 
Sbjct: 603  SMRFILTYSGQRQYSNYAQIMVRMDDQRNINALTQHVDRYIARNYPQVNASTKRVMFGPS 662

Query: 681  GGAKIEARIVGSDPTVLRSIAAQVMDVMYADPGAYNIRHDWRERTKVLEPQFNESQARRY 740
            G + IE RI G DP  LR +A+QV D++ ADP    +R+DW+ R+KV+ PQ++ +  R  
Sbjct: 663  GDSAIEVRIKGPDPDRLRLLASQVGDILSADPATDGVRNDWQNRSKVIRPQYSTALGREL 722

Query: 741  GITKADVDEFLAMSFSGKTIGVYRDGTTLMPIVARLPEEERVDIRNIEGMKIWSPALSEY 800
            G+ K D+D  L M+FSG   G+YR+G  L+P+V R P  ER D  ++  + +WS +  +Y
Sbjct: 723  GVDKQDIDNALEMNFSGSRAGLYREGADLLPVVVRPPAAERQDANHLNNVLVWSQSRQQY 782

Query: 801  IPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMADPDLLGEETAATLQQRLQPQIEAIPLPP 860
            IPL  V  G+ + WEDPLI+R++R R+LTV  DPD L  +T+  +  R++PQI+AI LP 
Sbjct: 783  IPLSNVVSGFHLEWEDPLILRRDRSRVLTVQTDPDPLSNQTSGDILSRVKPQIDAIALPH 842

Query: 861  GYFLEWGGEYESSGDAKASLFKTMPLGYLFMFLITVFLFNSVKESLIVWLTVPLAVIGVT 920
            GY +EWGG+ E+S +A+  LF T+PLGYL MF+ITV +F+S+K ++ +WLTVPLA+IGVT
Sbjct: 843  GYSIEWGGDAENSSEAQQGLFTTLPLGYLVMFVITVLMFSSLKNAVAIWLTVPLALIGVT 902

Query: 921  TGLLALNTPFGFMALLGFLSLSGMLLKNGIVLLDQIEIEMHSGKDPYLAVVDASLSRVRP 980
             G L    PFGFMAL+G LSLSGML++NGIVL+++IE +    K    A++ A+ SR+RP
Sbjct: 903  PGFLLTGIPFGFMALIGLLSLSGMLIRNGIVLVEEIE-QQKQEKGQQEAIIYAATSRLRP 961

Query: 981  VCMAAVTTILGMIPLLPDIFFRPMAVTIMFGLGFATVLTLIVVPVLYRLFHH 1032
            + + A TT+LG+ PLL D+FF+ MAV IMFGLGFAT+LTL+V+PV+Y  FH+
Sbjct: 962  ILLTAFTTVLGLAPLLLDVFFQSMAVVIMFGLGFATILTLLVLPVIYACFHN 1013