Pairwise Alignments

Query, 1037 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., AcrB/AcrD/AcrF family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  357 bits (916), Expect = e-102
 Identities = 256/923 (27%), Positives = 435/923 (47%), Gaps = 42/923 (4%)

Query: 140  ALPPGVNPPLVIDDFGDVYGILLAVTGEGYSYKELLDYVDYLRRELELIDGVSKVSVSGQ 199
            AL P +  P V     D    L AV  + YS+++L  Y + +R  LE +  V KVS  G 
Sbjct: 314  ALHPDLWEPAVFASGDDARAALEAVAADRYSWRDLEAYTEKVRATLERLGSVGKVSRWGV 373

Query: 200  QQEQVFIEISMKRISTLGISPQTVFNLLSTQNLVSDAGAIRIGSEYIRIHPTGEFDDVEK 259
            + E +FI+ S +R+++LG+ PQ V   L+ +N     G +      + +   GE      
Sbjct: 374  RPETIFIDWSQERLASLGLDPQQVAQTLAARNTSLPGGQLETRGRGVLLDSEGELRSATD 433

Query: 260  LGDLILSERGAQGLIYLRDVAEVKRGYVEVPSNVITF----------NGKLALNVGVSFA 309
            L +++++   +   +YLRDVA+V R Y     N+  F           GK A+ + V   
Sbjct: 434  LAEVMVATSASGAPLYLRDVADVTRSYRAPVENLNHFVHRDADGTWRRGK-AITLAVEMR 492

Query: 310  QGVNVVEVGQRFDRRLAELKYQQPIGIDIAEVYSQPKEVDKSVSGFVVSLGQAVAIVIIV 369
             G ++    +  D  L +L  + P  + +     QP++V + V  F +SL +AV +V+ V
Sbjct: 493  SGEHIDAFSREVDAALGDLTQRLPEDLLVVRTSDQPRQVTEKVDLFTLSLEEAVVLVVAV 552

Query: 370  LLF-FMGLRSGLLIGLILLLTVLGTFIFMQYFKIDLQRISLGALVIALGMLVDNAIVVVE 428
                F   RS LL+ L + LT+  TF  M    IDLQ+IS+ +L++ALG+LVD+ +V  +
Sbjct: 553  AFIGFREWRSALLMALSIPLTLAMTFGMMHLLGIDLQQISIASLILALGLLVDDPVVAGD 612

Query: 429  GILIGTQKGRTRLQAATDIVTQTKWPLLGATVIAVTAFAPIGLSEDATGEYCGTLFTVLL 488
             I     +GR R  AA    T+    +L AT+  + A+ P  L     G +  ++  V+ 
Sbjct: 613  AIKREIAEGRPRRLAAWLGPTKLARAILYATITNIVAYLPFLLLTGDKGRFLYSMPIVVA 672

Query: 489  ISLMLSWFTAISLTPFFADLFFRGQKAPASGEESDPYQGFIFVVYRRFLEFCMRRAWLTM 548
             SL+ S   +++  P    +     +   + EE       +  +Y     + +   W  +
Sbjct: 673  CSLVASRIVSMTFIPLLGSVLLDAGRREGTVEERRARG--LGRLYYAVGGWAIDHRWKVL 730

Query: 549  GVLVLGLAASLYGFTKVKQAFFPSSTTPMFMVDVWMPEGTDIRATDAILLELEKWLSAQ- 607
               +L + A  +   ++K  FFP   + +  VD+W+PE   + AT  +  +  + ++ + 
Sbjct: 731  AGSLLLVVAGFWLQGQLKPQFFPKDRSYLSYVDLWLPEDATVEATARVAADAARIVTDRV 790

Query: 608  ---------------ESVDSVTTTAGKGLQRFMLTYSPEKSYAAYGEITTRVTDYQQLAA 652
                            ++ SVT   G G  RF  + +PE     Y ++   V+D      
Sbjct: 791  AAFDAETGRAAKGLPPALRSVTVFTGGGGPRFWFSVTPELRQPNYAQLLVEVSDNHLTKE 850

Query: 653  LMARFRAHLDARYPQINYKLKQIELGPGGGAKIEARIVGSDPTVLRSIAAQVMDVMYADP 712
            L+   +  L  R P     + ++E GP  G  ++ R+ G D   LR+ + ++  ++ ADP
Sbjct: 851  LIGPLQQALSERLPSARADVMELENGPPIGVPVQLRLYGDDIPALRAESERLKAILRADP 910

Query: 713  GAYNIRHDWRERTKVLEPQFNESQARRYGITKADVDEFLAMSFSGKTIGVYRDGTTLMPI 772
             A  ++ +W   T V   + +  +A   G+T  DV      + +G T+   R+G   +P+
Sbjct: 911  DATRVKDNWGADTFVARLRVDPDKAALSGVTMLDVARATGNAATGTTVTALREGRLTVPV 970

Query: 773  VARLPEEERVDIRNIEGMKIWSPALSEYIPLQQVTLGYEMRWEDPLIVRKNRKRMLTVMA 832
            V+RL  +ER D  ++EG+ +     +  +PL Q+    E   E   I R+N++R + +  
Sbjct: 971  VSRLRPDERADATDVEGLYVAGQGGTR-VPLAQIAEP-EYGMETARIFRRNQQRCVVISC 1028

Query: 833  DP--DLLGEETAATLQQRLQPQIEAI--PLPPGYFLEWGGEYESSGDAKASLFKTMPLGY 888
             P   +L  E  A    R  P I      LPPG+ LE+GGE+E        L   M +  
Sbjct: 1029 FPREGVLPSEVVA----RAMPAIGRFRADLPPGFRLEFGGEHEEQVKGFKELAGVMGISI 1084

Query: 889  LFMFLITVFLFNSVKESLIVWLTVPLAVIGVTTGLLALNTPFGFMALLGFLSLSGMLLKN 948
              +++  +F F +  + LIV+  +P  + G    L  +  PFGFMA LG  SL G+++ +
Sbjct: 1085 AMIYMALLFQFRNAVKPLIVFAAIPYGMTGAFAALRLMGQPFGFMAFLGIASLIGVIVSH 1144

Query: 949  GIVLLDQIEIEMHSGKDPYLAVVDASLSRVRPVCMAAVTTILGMIPLL--PDIFFRPMAV 1006
             IVL D IE +   G+D   A++DA + R+RPV +    T++ + PL       + P+  
Sbjct: 1145 IIVLFDFIEEKREEGEDLRTALLDAGIVRLRPVMITVAATVIALFPLALHGGALWEPLCY 1204

Query: 1007 TIMFGLGFATVLTLIVVPVLYRL 1029
                GL  AT +TL++VPVLY +
Sbjct: 1205 AQAGGLTVATFVTLLMVPVLYAI 1227



 Score = 81.3 bits (199), Expect = 4e-19
 Identities = 45/152 (29%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 23  AAYFINNRVISWMVSLIFLIGGTAAFFNLGRLEDPAFTIKDAMVVTSYPGATPQQVEEEV 82
           A +F+  R I W++ +  L+ G  A+  + + +DP   ++ A V+ ++PGA  ++VEE +
Sbjct: 18  ARFFVEQRHIGWVLLVATLVWGVWAWHAMPQRKDPEIPVRAAAVLVAWPGAPAERVEERI 77

Query: 83  TYPLEKAIQQLTYVDEVNSISSRGLSQITVTMKNNYGPDDLPQIWDELRRKVNDLKGALP 142
           T  +E+A+    +V+++ S+S  GLS +T+ +       D   + D++  ++ ++ G LP
Sbjct: 78  TRRVEEAVGGNKWVEKIESVSRTGLSVVTLHLHERVAQTD--TVLDDIGFRLQEV-GQLP 134

Query: 143 PGVNPPLVIDDFGDVYGILLAVTGEGYSYKEL 174
            G  P   I DFGD   ++L V     S  EL
Sbjct: 135 DGAGPLTYIKDFGDTSTLMLTVASPRVSGVEL 166